DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sti and RPGRIP1

DIOPT Version :9

Sequence 1:NP_001261768.1 Gene:sti / 39429 FlyBaseID:FBgn0002466 Length:1858 Species:Drosophila melanogaster
Sequence 2:NP_065099.3 Gene:RPGRIP1 / 57096 HGNCID:13436 Length:1286 Species:Homo sapiens


Alignment Length:821 Identity:167/821 - (20%)
Similarity:301/821 - (36%) Gaps:255/821 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   625 MLQQIKEQNLK-----SETNHEEQRRQMAELYEQKL--TDLRKKVRDSQDTNRRMTMEIKEIRTE 682
            :|...|.:|:|     |..|.||.......|.|..:  .:|..|.:|          |||.:||.
Human    23 VLPASKGKNMKTQPPLSRMNREELEDSFFRLREDHMLVKELSWKQQD----------EIKRLRTT 77

  Fly   683 LDESISSSKSTQEAKNATERNIEEILRRLNEEIASNNELHAEKVKLETKLQLKENETQEVRAECH 747
            |....::.:..:.|:.|..  :.|..||            .:|.....:|.:.:      |.:.|
Human    78 LLRLTAAGRDLRVAEEAAP--LSETARR------------GQKAGWRQRLSMHQ------RPQMH 122

  Fly   748 RLEREL--------QLAECRCQLAESSLATQVSPYE-------------TAPGSLTELNAIEDQL 791
            ||:...        :.|:.|.|:....|.|..:|..             |||.|..|....|:  
Human   123 RLQGHFHCVGPASPRRAQPRVQVGHRQLHTAGAPVPEKPKRGPRDRLSYTAPPSFKEHATNEN-- 185

  Fly   792 RADLLAAKESENHQKGRADQLQTLVTKLEQMLERFNEQSLS-------PTKSH-----SSRKQEG 844
            |.: :|:|.||            ||:....::...:..|::       |..:|     :.:.:|.
Human   186 RGE-VASKPSE------------LVSGSNSIISFSSVISMAKPIGLCMPNSAHIMASNTMQVEEP 237

  Fly   845 ETVGDMLERQNEKLEDKLAAVREQMIVERQAARTANLSLWKVEKQLEEALSEKKLLARRMELTED 909
            ....:.:..::|..|.:.:....|...|.:|:....:.|.:::|.|.|  ....|:..:.:||| 
Human   238 PKSPEKMWPKDENFEQRSSLECAQKAAELRASIKEKVELIRLKKLLHE--RNASLVMTKAQLTE- 299

  Fly   910 RIKKVQNASDEAQRMLKTSQEETRQRESRIEELKQELAAAKRDVLKEHRQWEKAEQERMKCKSEI 974
                ||.|                 .|:.:::.:..|:||...:||:                  
Human   300 ----VQEA-----------------YETLLQKNQGILSAAHEALLKQ------------------ 325

  Fly   975 IEHLANVHRLEQQETELRQKLRQIQSRFDGVTLEQKNTIRELQEEREKSRKANDSCLVLQKELKQ 1039
                  |:.|..:..|..:|...::|:.:.|::.|. |::|.||..|.          |:||.|.
Human   326 ------VNELRAELKEESKKAVSLKSQLEDVSILQM-TLKEFQERVED----------LEKERKL 373

  Fly  1040 LTDNFQRLKYACSITDSQLTEVETMLKSEQERNKSQKSQLDTLHEKLRERNDQLTDLRKQLTTVE 1104
            |.||:.:|             :|:||.|....::...|. :.:.|:|:::..||.|         
Human   374 LNDNYDKL-------------LESMLDSSDSSSQPHWSN-ELIAEQLQQQVSQLQD--------- 415

  Fly  1105 SEKRLAEQRAQVLASEIDELRLNLKEQQKKLVAQQDQLVEQTNALFATQERAELLDGQNANYEAQ 1169
                       .|.:|:::.|..|.|..::....:|..:|.||.|...::..|||  |||...:|
Human   416 -----------QLDAELEDKRKVLLELSREKAQNEDLKLEVTNILQKHKQEVELL--QNAATISQ 467

  Fly  1170 TADSNREMV---SLKEENARI-LSELFHKKEEVGNLQAEIRGLESAQANLHAEIDSLQDTLAEKE 1230
            ..|...|..   ::.:||.:| .||  .|.:|...|...:..|:.:.|....|::..:|.|    
Human   468 PPDRQSEPATHPAVLQENTQIEPSE--PKNQEEKKLSQVLNELQVSHAETTLELEKTRDML---- 526

  Fly  1231 QFYVQRDIKSNATLAQHKKLIDYLQLKVEDLSAKKKKTLADKLFGSSHTNKENVSPNDVESSILY 1295
                         :.|.|..:.|    .|:|.|...|        :.:.|:::            
Human   527 -------------ILQRKINVCY----QEELEAMMTK--------ADNDNRDH------------ 554

  Fly  1296 RALKEELKREQKMNSLLKEQLAQLNGTATLRSPRKSAAVNGDSDAP---KQRPVSIAALPRSPQK 1357
               ||:|:|..::..|...::.||.|  .|||          .|.|   :.:.|:....|.|...
Human   555 ---KEKLERLTRLLDLKNNRIKQLEG--ILRS----------HDLPTSEQLKDVAYGTRPLSLCL 604

  Fly  1358 QQQPLKRTTSQVELKTTAEKPTKVTIENQAHHRFELALQES 1398
            :..|......:|:          :::.:|..:.|||.:.::
Human   605 ETLPAHGDEDKVD----------ISLLHQGENLFELHIHQA 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stiNP_001261768.1 PKc_like 111..452 CDD:304357
S_TKc 113..383 CDD:214567
Smc 487..1222 CDD:224117 135/640 (21%)
CNH 1503..1774 CDD:279162
RPGRIP1NP_065099.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 144..193 12/51 (24%)
Seryl_tRNA_N <321..382 CDD:299883 22/108 (20%)
C2-C2_1 619..756 CDD:288470 4/17 (24%)
C2 801..908 CDD:175973
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 934..1008
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1058..1108
Interaction with RPGR. /evidence=ECO:0000269|PubMed:24981858 1091..1281
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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