DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment eyg and Vsx2

DIOPT Version :10

Sequence 1:NP_524042.2 Gene:eyg / 39419 FlyBaseID:FBgn0000625 Length:670 Species:Drosophila melanogaster
Sequence 2:XP_017449515.1 Gene:Vsx2 / 171360 RGDID:621215 Length:380 Species:Rattus norvegicus


Alignment Length:188 Identity:61/188 - (32%)
Similarity:89/188 - (47%) Gaps:14/188 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 ARTAAYGLY--------PPPPHPYGSFTWHPAGNVPGGQGVPPPPPPSALWSVAAPTLANLPPSA 285
            ||...:|:.        ||..||..:......|::...:.|   ..|:.:.|:.......||...
  Rat    27 ARCTGFGIQEILGLNKEPPSSHPRAALDGLAPGHLLAARSV---LSPAGVGSMGLLGPGGLPGFY 88

  Fly   286 ASAVPVSTCGSLSSAHLMAGGAGGTPTNRAISPGSGSHDTLESADENRHIDSDYLDDDDEPKFRR 350
            |....:.......|.||...|....|.:.:.:..|.|.|...|   :|.:....|:...:.|.||
  Rat    89 AQPTFLEVLSDPQSVHLQPLGRASGPLDTSQTASSDSEDVSSS---DRKMSKSALNQTKKRKKRR 150

  Fly   351 NRTTFSPEQLEELEKEFDKSHYPCVSTRERLSSRTSLSEARVQVWFSNRRAKWRRHQR 408
            :||.|:..|||||||.|:::|||.|..||.|:.:|.|.|.|:||||.|||||||:.::
  Rat   151 HRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREK 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eygNP_524042.2 HTH_ARSR 120..217 CDD:481197
Homeodomain 349..405 CDD:459649 34/55 (62%)
Vsx2XP_017449515.1 Homeodomain 153..205 CDD:459649 31/51 (61%)
OAR 319..337 CDD:461067
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.