DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toe and pax8

DIOPT Version :9

Sequence 1:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster
Sequence 2:XP_012814730.1 Gene:pax8 / 780226 XenbaseID:XB-GENE-483693 Length:467 Species:Xenopus tropicalis


Alignment Length:532 Identity:142/532 - (26%)
Similarity:210/532 - (39%) Gaps:171/532 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 PHSLSPSTPILTQGAPPAAA-----------LGGIFCGGSAAAGPGAAAAAATNLNALASQHRLL 137
            |:|...|..|..:|....|:           |||.|..|..             |..:..| |::
 Frog     2 PNSSIRSELITERGCSGPASNLNIGHGGLNQLGGAFVNGRP-------------LPEVVRQ-RIV 52

  Fly   138 ELSRFGLRGYDLAQHMLSQQGAVSKLL-------GTLRPPGLIGGSKPKVATPTVVSKIEQYKRE 195
            :|:..|:|..|:::.:....|.|||:|       |::| ||:|||||||||||.||.||..|||:
 Frog    53 DLAHQGVRPCDISRQLRVSHGCVSKILGSRYYETGSIR-PGVIGGSKPKVATPKVVEKIGDYKRQ 116

  Fly   196 NPTIFAWEIRERLITEGVCTNATAPSVSSINRILRNRAAE---RAAAEFARAASYGYAIHPTHPH 257
            |||:||||||:||:.||||.|.|.|||||||||:|.:..:   .......::.|.|..:.|:   
 Frog   117 NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQLFNLPMESCVKSLSPGQTLIPS--- 178

  Fly   258 PYTSFPTWPAHHPLWGAVPLATPPGGGPAGAGGALQPGGSGSSYGSDGNMSSNPNSSNSNTTHSN 322
                           .||   |||                           .:|:|.:..:|:|.
 Frog   179 ---------------SAV---TPP---------------------------ESPHSDSLGSTYSI 198

  Fly   323 GHNTNSGSGCGDSSAGSGRLSLPALSPDSGSRDSRSPDADANRMIDIEGEDS-----ESQDSDQP 382
                            ||.|.:            ..|.||..|.:|...::|     :||.|...
 Frog   199 ----------------SGLLGI------------TQPGADGKRKLDDSDQESCRLSIDSQGSMGI 235

  Fly   383 KFRRNRT-TFSPEQLDELEKEFDKSHYP-----CVNTREKLAART------ALSEARVQVWFSNR 435
            ..::.|| .:....||.||..|.:.|:|     ..:::.:.|..|      |:.:.:..:..:|.
 Frog   236 SRKQLRTEAYGHHPLDALECHFQRQHFPESYSSSTHSKTEQALYTLPLLNNAMDDGKSSLTSTNT 300

  Fly   436 R--AKWRRHQRVN--------LIKQR--DSPSTSSSPTPLVNPVVSPVSPIPVPVPVAVPESGQQ 488
            .  .....||..:        .|||.  ||.|.||:|:.|.:|....:.||              
 Frog   301 TIGRNLSTHQGYSALSELSAFTIKQEASDSSSASSTPSSLCSPTFLDLQPI-------------- 351

  Fly   489 KQPYPYSTSNMCNTSSSSSNSQPCNTINP-GSKMSSKTSSVSSN-----QHMEEPAAAVATASPT 547
                    |:.|:..|.|:.|.|.:.... .|.|:|....|.|.     .|:  |:.....||..
 Frog   352 --------SSGCSAPSFSAFSHPASVYGQFTSHMASGRDVVGSTLPGYPPHI--PSGQGNYASSA 406

  Fly   548 ASAPLSMGGENS 559
            .:..::.||:.|
 Frog   407 IAGMVAAGGDYS 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toeNP_524041.2 HTH 134..230 CDD:304362 58/102 (57%)
Homeobox 388..440 CDD:278475 13/65 (20%)
pax8XP_012814730.1 PAX 26..151 CDD:128645 65/139 (47%)
Pax2_C 355..465 CDD:372091 17/66 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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