DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toe and pax2b

DIOPT Version :9

Sequence 1:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_571715.1 Gene:pax2b / 60638 ZFINID:ZDB-GENE-001030-4 Length:386 Species:Danio rerio


Alignment Length:475 Identity:138/475 - (29%)
Similarity:196/475 - (41%) Gaps:145/475 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 LGGIFCGGSAAAGPGAAAAAATNLNALASQHRLLELSRFGLRGYDLAQHMLSQQGAVSKLLGTLR 168
            |||:|..|...  |...            :.|::||:..|:|..|:::.:....|.|||:||...
Zfish    22 LGGVFVNGRPL--PDVV------------RQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYY 72

  Fly   169 -----PPGLIGGSKPKVATPTVVSKIEQYKRENPTIFAWEIRERLITEGVCTNATAPSVSSINRI 228
                 .||:|||||||||||.||.||..|||:|||:||||||:||:.||:|.|.|.|||||||||
Zfish    73 ETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRI 137

  Fly   229 LRNRAAERAAAEFARAASYGYAIHPTHPHPYTSFPTWPAHHPLWGAVPLATPPGGGPAGAGGALQ 293
            :|.:..:                 |.||.|              ....|:||        |..:.
Zfish   138 IRTKVQQ-----------------PFHPSP--------------DGTSLSTP--------GHTII 163

  Fly   294 PGGSGSSYGSDGNMSSNPNSSNSNTTHSNGHNTNSGSGCGDSSAGSGRLSLPALSPDSGSRDSRS 358
            |           :.:|.|.||:||            ...|..|. :|.|.:|..:.:...||:..
Zfish   164 P-----------STASPPVSSSSN------------DPVGSYSI-NGILGIPRSNGEKRKRDADG 204

  Fly   359 PDADANRMIDIEGEDSESQDSDQPKFRRNRT-TFSPEQLDELEKEFDKSHYPCV-NTREKL---- 417
            .:..|        :.|:||.|.:...:..|. .|:.:||:.|::.|::..:|.| .|.|.:    
Zfish   205 SEGSA--------QSSDSQGSVESLRKHLRADAFTQQQLEALDRVFERPAFPDVFPTSEHIKPEQ 261

  Fly   418 -------AARTALSEARVQVWFSNRRAKWRRHQRVNLIKQRDSPSTSSSPTPLVNPVVSPVSPI- 474
                   |..|.|.|.:                          ||.|||....:...||...|: 
Zfish   262 ASEYSLPALNTGLDEVK--------------------------PSLSSSAASDLGASVSQSYPVG 300

  Fly   475 ------PVP-VPVAVPESGQQKQPYPYST-SNMCNTSSSSSN--SQPCNTINPGSKMSSKTSSVS 529
                  .:| .|..||.:||..  ||.|| :.|...|..|.|  |.|..|....:...|..:.:|
Zfish   301 RDMANTTLPGYPPHVPPTGQGS--YPTSTLAGMVPGSEFSGNPYSHPQYTTYNEAWRFSNPAILS 363

  Fly   530 SNQHMEEPAAAVATASPTAS 549
            |..:.   :|:..:|.|||:
Zfish   364 SPYYY---SASRGSAPPTAA 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toeNP_524041.2 HTH 134..230 CDD:304362 57/100 (57%)
Homeobox 388..440 CDD:278475 14/64 (22%)
pax2bNP_571715.1 PAX 15..139 CDD:128645 63/130 (48%)
Pax2_C 290..384 CDD:289189 28/96 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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