DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toe and pax8

DIOPT Version :9

Sequence 1:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster
Sequence 2:XP_001339893.5 Gene:pax8 / 60637 ZFINID:ZDB-GENE-001030-3 Length:448 Species:Danio rerio


Alignment Length:519 Identity:137/519 - (26%)
Similarity:203/519 - (39%) Gaps:142/519 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 LGGIFCGGSAAAGPGAAAAAATNLNALASQHRLLELSRFGLRGYDLAQHMLSQQGAVSKLLGTLR 168
            |||:|..|..             |..:..| |:::::..|:|..|:::.:....|.|||:||...
Zfish    15 LGGMFVNGRP-------------LPEVIRQ-RIVDMAHQGVRPCDISRQLRVSHGCVSKILGRYY 65

  Fly   169 -----PPGLIGGSKPKVATPTVVSKIEQYKRENPTIFAWEIRERLITEGVCTNATAPSVSSINRI 228
                 .||:|||||||||||.||.||.:|||:|||:||||||:||:.||||...|.|||||||||
Zfish    66 ETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDGDTVPSVSSINRI 130

  Fly   229 LRNRAAERAAAEF-ARAASYGYAIHPTHPHPYTSFPTWPAHHPLWGAVPLATPPGGGPAGAGGAL 292
            :|.:..:...... .:..|.|:.:.|:                  .||   |||        .:.
Zfish   131 IRTKVQQPFNLPLDTKGLSPGHTLIPS------------------SAV---TPP--------ESP 166

  Fly   293 QPGGSGSSYGSDGNMSSNPNSSNSNTTHSNGHNTNSGSGCGDS--SAGSGRLSLPALSPDSGSRD 355
            |....||:|..:|.:.....:::.    ..||:.:....|..|  |.|||          .|:|.
Zfish   167 QSDSLGSTYSINGLLGITQTTADG----KRGHDDSDQESCRHSVDSQGSG----------GGARK 217

  Fly   356 SRSPDADANRMIDIEGEDSESQDSDQPKFRRNRTTFSPEQLDELEKEFDKSHYPCVNTREKLAAR 420
            ....:...:..:|...|...|.||           ||       :.:.::..||..      ...
Zfish   218 QLRTEHFPSAALDCGFERHYSSDS-----------FS-------QSKAEQQLYPLA------LMN 258

  Fly   421 TALSEARVQVWFSNRRAKWRRHQRVNLIKQRDSPSTSSSPTPL-----VNPVVSPVSPIPVPVPV 480
            ..|.|.:.....|...|   .||...::.:      :..|.||     |:|.|:.:||       
Zfish   259 PGLDEGKGASSISRNLA---AHQGYAVVTE------ALQPLPLCLKQEVSPEVNSLSP------- 307

  Fly   481 AVPESGQQKQPYPYSTSNMCNTSSSSSNSQPCNTINPGSKMSSKTSSVSSNQHMEEPAAAVATAS 545
                     .|:..|.|...:.|:.||.|            |:..:|...:.|:....::.:..:
Zfish   308 ---------SPHIISGSAFLDLSAISSPS------------SAPVASSCGSAHLSHGFSSFSHHA 351

  Fly   546 PT---ASAPLSMGGENSAFRALPMTLPMPMTLPTASAAAFALSFARQYIAKYMGTPLNLGHGSS 606
            |.   .|:|..|.|...|...||   ..|..:|||..     .|:...||..:..|...|...|
Zfish   352 PVHGQFSSPSLMAGREVASSMLP---GYPPHIPTAQT-----GFSSSTIAGMVSAPEYTGQSYS 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toeNP_524041.2 HTH 134..230 CDD:304362 55/100 (55%)
Homeobox 388..440 CDD:278475 8/51 (16%)
pax8XP_001339893.5 PAX 8..132 CDD:128645 62/130 (48%)
Pax2_C 343..437 CDD:289189 18/73 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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