DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toe and alx4b

DIOPT Version :9

Sequence 1:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001297007.1 Gene:alx4b / 497424 ZFINID:ZDB-GENE-050208-140 Length:259 Species:Danio rerio


Alignment Length:286 Identity:64/286 - (22%)
Similarity:101/286 - (35%) Gaps:83/286 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   315 NSNTTHSNGHNTNSGSGCGDSSAGSGRLS-------------------LPALSPDSGSRDSRSP- 359
            |::|..|....|:..|....::.|.||:.                   |||.....|.: .||| 
Zfish     2 NADTCVSYCDMTSMDSYYSPAAPGQGRVQQANPYRTFQSSDSKYSPTFLPAKGQTYGEK-PRSPF 65

  Fly   360 DADANRMIDIEGEDSESQDSDQPKFRRNRTTFSPEQLDELEKEFDKSHYPCVNTREKLAARTALS 424
            ..|...:.|...|.:.|:   ...|.:.....||.:..:||   |.:...|...           
Zfish    66 HQDCPTLDDSTAEGAYSK---YHLFMQRPACKSPSEDSKLE---DGALISCYGV----------- 113

  Fly   425 EARVQVWFSNRRAKWRRHQRVNLIKQRDSPSTSSSPTPLV----------NPV----VSPVSPIP 475
                   .|....|||:.:|...::|..:..:::...||:          ||.    .|..||:|
Zfish   114 -------VSESPGKWRKRERFGQMQQVRTHFSTAYELPLLTRPENYAQIQNPSWLSGSSSASPVP 171

  Fly   476 -VPVPVAVPESGQQKQPYPYSTS-------------NMCNTSSSS--SNSQPCNTINPGSKMS-- 522
             ..||.....|..  .|:|:|.|             :|..|...|  .:|....||| |..:|  
Zfish   172 GCVVPCDTVSSCM--TPHPHSASGVSDFLGMPSPGGSMAQTHMGSLFGSSGVGGTIN-GYDLSVE 233

  Fly   523 --SKTSSVSS-NQHMEEPAAAVATAS 545
              .|:||::| ....:|.:||::.|:
Zfish   234 PDRKSSSIASLRMKAKEHSAAISWAT 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toeNP_524041.2 HTH 134..230 CDD:304362
Homeobox 388..440 CDD:278475 8/51 (16%)
alx4bNP_001297007.1 OAR 235..252 CDD:281777 5/16 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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