DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toe and Ptx1

DIOPT Version :9

Sequence 1:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001138130.2 Gene:Ptx1 / 43664 FlyBaseID:FBgn0020912 Length:610 Species:Drosophila melanogaster


Alignment Length:696 Identity:159/696 - (22%)
Similarity:234/696 - (33%) Gaps:251/696 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 AAALGGIFCGGSAAAGPGAAAAAATNL--------------NALASQHRLLELSRFGLRGYDLAQ 151
            ::|:||  |||....|.|...::||.|              .||.           ||.......
  Fly     4 SSAVGG--CGGGGGLGVGVVTSSATALGPGGLTNGGGGVVSGALN-----------GLEAMSAES 55

  Fly   152 HMLSQQGAVSKLLGTLRPPGLIGGSKPKVATPTVVSKIEQYKRENPTIFAWEIRERLITEGVCTN 216
            ..|..|..||  .||....|..|.::....|.|.:|   .....:.|:..         .|..|:
  Fly    56 TGLCLQDLVS--AGTANGAGSAGSAESATTTSTALS---SGSTGSSTVNG---------GGSSTS 106

  Fly   217 AT------------------APSVSSINRI-----LRNRAAERAAAEFARAASYGYAIHPTH--- 255
            .|                  :|::||:..|     |.:.|.:....        ||:.||.|   
  Fly   107 GTEHLHSHHSLHDSSSSVSISPAISSLMPISSLSHLHHSAGQDLVG--------GYSQHPHHTVV 163

  Fly   256 -PHPYTSFPTWPAHHPL-----WGAVPLATPPGGGPAGAGGALQPGGSGSSYGSDGNMSSNPNSS 314
             ||.       |.|.||     |..                      :|....|..:|::..||.
  Fly   164 PPHT-------PKHEPLEKLRIWAE----------------------TGDFRDSHSSMTAVANSL 199

  Fly   315 NSNTTHSNGHNTNSGSGCGDSSAGSGRLSLPALSPDSGSRDSRSPDADANRMID---IEGEDSES 376
            :|  ||.|...|:|.|                 |..:.|||.:    |.||.::   |:.|:..|
  Fly   200 DS--THLNNFQTSSTS-----------------SISNRSRDRK----DGNRSVNETTIKTENISS 241

  Fly   377 QDSDQP---------------KFRRNRTTFSPEQLDELEKEFDKSHYPCVNTREKLAARTALSEA 426
            ...|:|               :.||.||.|:.:||.|||..|.::.||.::|||::|..|.|:||
  Fly   242 SGHDEPMTTSGEEPKNDKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDMSTREEIAMWTNLTEA 306

  Fly   427 RVQVWFSNRRAKWRRHQRVNLIKQ-------------------RDSPSTSSSPTPLVNPVVSPVS 472
            ||:|||.|||||||:.:| |.:..                   .|....||.|......|.||:.
  Fly   307 RVRVWFKNRRAKWRKRER-NAMNAAVAAADFKSGFGTQFMQPFADDSLYSSYPYNNWTKVPSPLG 370

  Fly   473 PIPVPVPV-----AVPESGQQKQPYPYST--------------------SNMCNTSSSSSNSQPC 512
            ..|.|.||     .|..:..|.....::|                    |::.|||:..:...||
  Fly   371 TKPFPWPVNPLGSMVAGNHHQNSVNCFNTGASGVAVSMNNASMLPGSMGSSLSNTSNVGAVGAPC 435

  Fly   513 NTINPGS-----------KMSSKTSSVSSNQHMEEPAAAVATASPTASAPLSMGGENSAFRALPM 566
            ....|.:           ..||.:||:::.:...:..|:....|| .|||..:...|||..:...
  Fly   436 PYTTPANPYMYRSAAEPCMSSSMSSSIATLRLKAKQHASAGFGSP-YSAPSPVSRSNSAGLSACQ 499

  Fly   567 TLPMPMTLPTASAAAFALSFARQYIAKYM--------GTP---------------LNLGH----- 603
            ...:.:|... ..|..||....|:..::.        |.|               |.|.|     
  Fly   500 YTGVGVTDVVXENALGALLNQHQHHLQHFSGGSVGGSGVPNGMQQHSGNMLHHSNLGLDHSDLGL 564

  Fly   604 -GSSPIQAQSGRDHQSE--------------EREYEDEQEEEEVIN 634
             |..|...|...:|..|              .....::.::|:||:
  Fly   565 VGGGPSNHQDEGNHSLEGSNKSPMEAPLANSSNNNNNDNDDEDVID 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toeNP_524041.2 HTH 134..230 CDD:304362 21/118 (18%)
Homeobox 388..440 CDD:278475 29/51 (57%)
Ptx1NP_001138130.2 Homeobox 268..320 CDD:278475 29/51 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450805
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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