DRSC/TRiP Functional Genomics Resources

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Protein Alignment toe and Rhox12

DIOPT Version :9

Sequence 1:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001020254.1 Gene:Rhox12 / 382282 MGIID:2685994 Length:186 Species:Mus musculus


Alignment Length:168 Identity:51/168 - (30%)
Similarity:74/168 - (44%) Gaps:28/168 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 AGGALQPG--GSGSSYGSDGNMSSNPNSSNSNTTHSNGHNTNSGSGCGDSSAGSGRLSLPALSPD 350
            |.||.:.|  |.||..||| .:.......:.:.....|...|.|:...|...||          .
Mouse    30 ADGAAEGGSFGDGSLNGSD-KLKCQGIPDDKDDVIYVGELKNIGNDIKDECHGS----------H 83

  Fly   351 SGSRDSRSPDADANRMIDIEGEDSESQDSDQPKFRRNRTT----FSPEQLDELEKEFDKSHYPCV 411
            .||.|.:..:...|           |..:..|:.||.|..    |:|.||:|||..|:|:.||..
Mouse    84 QGSGDPQPEEKQKN-----------SAAARVPQVRRTRPRIQLGFTPRQLNELEDFFEKTKYPDA 137

  Fly   412 NTREKLAARTALSEARVQVWFSNRRAKWRRHQRVNLIK 449
            .||:.||....|:|::||.||..|||.:|:.|:..:::
Mouse   138 LTRKNLAKHLYLAESKVQRWFKKRRAHYRKEQQSQVLQ 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toeNP_524041.2 HTH 134..230 CDD:304362
Homeobox 388..440 CDD:278475 25/55 (45%)
Rhox12NP_001020254.1 homeodomain 107..169 CDD:238039 28/61 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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