DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toe and prd

DIOPT Version :9

Sequence 1:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_723721.1 Gene:prd / 34629 FlyBaseID:FBgn0003145 Length:613 Species:Drosophila melanogaster


Alignment Length:602 Identity:165/602 - (27%)
Similarity:247/602 - (41%) Gaps:193/602 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 TAATTVLAQPHSLSPST-PILTQGAPPAAALGGIFCGGSAAAGPGAAAAAATNLNALASQHRLLE 138
            ||....:.:|.....|| ..:..|......|||:|..|         .....|:..     :::|
  Fly     4 TAFAAAMHRPFFNGYSTMQDMNSGQGRVNQLGGVFING---------RPLPNNIRL-----KIVE 54

  Fly   139 LSRFGLRGYDLAQHMLSQQGAVSKLL------GTLRPPGLIGGSKPKVATPTVVSKIEQYKRENP 197
            ::..|:|...:::.:....|.|||:|      |::| ||:||||||::|||.:.::||:|||.:|
  Fly    55 MAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIR-PGVIGGSKPRIATPEIENRIEEYKRSSP 118

  Fly   198 TIFAWEIRERLITEGVCTNATAPSVSSINRILRNRAAERAAAEFARAASYGYAIHPTHPHPYTSF 262
            .:|:|||||:||.||||..:||||||:|:|::|.|.|                            
  Fly   119 GMFSWEIREKLIREGVCDRSTAPSVSAISRLVRGRDA---------------------------- 155

  Fly   263 PTWPAHHPLWGAVPLATPPGGGPAGAGGALQPGGSGSSYGSDGNMSSNPNSSNSNTTHSNGHNTN 327
               |..:.:..|       .|.|||.|                                    |.
  Fly   156 ---PLDNDMSSA-------SGSPAGDG------------------------------------TK 174

  Fly   328 SGSGCGDSSAGSGRLSLPALSPDSGSRDSRSPDADANRMIDIEGEDSESQDSDQPKFRRNRTTFS 392
            :.|.||...:|             |..::..|..:     ||...:||...:.:.|.||.|||||
  Fly   175 ASSSCGSDVSG-------------GHHNNGKPSDE-----DISDCESEPGIALKRKQRRCRTTFS 221

  Fly   393 PEQLDELEKEFDKSHYPCVNTREKLAARTALSEARVQVWFSNRRAKWRRHQRVNLIKQRDSPS-- 455
            ..||||||:.|:::.||.:.|||:||.||.|:|||:|||||||||:.|        ||..|.|  
  Fly   222 ASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFSNRRARLR--------KQHTSVSGG 278

  Fly   456 ------TSSSPTPLVNPVVSPVSPIPVPVPVAV------PESGQQKQPYPYSTSNMCNTSSSSSN 508
                  .|.|.....:.:.|.||.:|...|:|:      |.:..|:| |.:..|: .|.|.|::.
  Fly   279 APGGAAASVSHVAASSSLPSVVSSVPSMAPLAMMPGSLDPATVYQQQ-YDFYGSH-ANISVSAAA 341

  Fly   509 SQPCNTINPGSKMSSKTSSVSSNQHMEEPAAAVAT---------ASPTASAPLS---------MG 555
            ....:.::||.     |::...:.....|:|..|:         .:||.:..:|         .|
  Fly   342 PMASSNLSPGI-----TTTPPHHHQFYNPSANTASYIMPGENGNTTPTGNIIVSSYETQLGSVYG 401

  Fly   556 GE-----------------NSAFRALPMTLPMPMTLPTASAAAFALSFARQYIAKYMGTPLNLGH 603
            .|                 :|||..||   |.|.:|....:.|...|.:            ....
  Fly   402 TETETHQTMPRNESPNESVSSAFGQLP---PTPNSLSAVVSGAGVTSSS------------GANS 451

  Fly   604 GSSPIQAQSGRDHQSEE 620
            |:.|.|:.:.....|||
  Fly   452 GADPSQSLANASAGSEE 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toeNP_524041.2 HTH 134..230 CDD:304362 47/101 (47%)
Homeobox 388..440 CDD:278475 34/51 (67%)
prdNP_723721.1 PAX 27..154 CDD:238076 55/141 (39%)
Homeobox 217..269 CDD:278475 34/51 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450817
Domainoid 1 1.000 55 1.000 Domainoid score I4097
eggNOG 1 0.900 - - E1_KOG0849
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.840

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