DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toe and sdcbp2

DIOPT Version :9

Sequence 1:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_997856.1 Gene:sdcbp2 / 325004 ZFINID:ZDB-GENE-030131-3727 Length:299 Species:Danio rerio


Alignment Length:110 Identity:18/110 - (16%)
Similarity:37/110 - (33%) Gaps:32/110 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   447 LIKQRDSPSTSSSPTPLVNPVVSPVSPIPVPVPVAVPESGQQKQPYPYSTSNMCNTSSSSSNSQP 511
            :|:.:...:.::|.||                  |:.:...|.||              ::...|
Zfish    15 VIRAQSQFANATSSTP------------------AITQGAYQPQP--------------ATQGMP 47

  Fly   512 CNTINPGSKMSSKTSSVSSNQHMEEPAAAVATASPTASAPLSMGG 556
            .:|:.|..:.......:|.|....:...|:...:...:.|.|:||
Zfish    48 SSTLYPNLEELGDYMGLSLNSDEVQRNLALVPVATQVAVPSSVGG 92

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toeNP_524041.2 HTH 134..230 CDD:304362
Homeobox 388..440 CDD:278475
sdcbp2NP_997856.1 PDZ_signaling 113..>173 CDD:238492
PDZ_signaling 198..270 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.