DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toe and pax2a

DIOPT Version :9

Sequence 1:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster
Sequence 2:XP_021336168.1 Gene:pax2a / 30425 ZFINID:ZDB-GENE-990415-8 Length:519 Species:Danio rerio


Alignment Length:557 Identity:147/557 - (26%)
Similarity:210/557 - (37%) Gaps:182/557 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 LGGIFCGGSAAAGPGAAAAAATNLNALASQHRLLELSRFGLRGYDLAQHMLSQQGAVSKLLGTLR 168
            |||:|..|...  |...            :.|::||:..|:|..|:::.:....|.|||:||:.:
Zfish    26 LGGVFVNGRPL--PDVV------------RQRIVELAHQGVRPCDISRQLRVSHGCVSKILGSYQ 76

  Fly   169 ------------PPGLIGGSKPKVATPTVVSKIEQYKRENPTIFAWEIRERLITEGVCTNATAPS 221
                        .||:|||||||||||.||.||.:|||:|||:||||||:||:.||||.|.|.||
Zfish    77 KDLIRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAEGVCDNDTVPS 141

  Fly   222 VSSINRILRNR-------AAERAAAEFARAASYGYAIHPTHPHPYTSFPTWPAHHPLWGAVPLAT 279
            |||||||:|.:       :::......:.|   |:.|......|||          |..:..|:.
Zfish   142 VSSINRIIRTKVQQPFHPSSDGTGTPLSTA---GHTIGDLESTPYT----------LTYSCALSV 193

  Fly   280 PPGGGPAGAGGALQPGGSGSSYGSDGNMSSNPN---------SSNSNTTHSNGHNTNSGSGCGDS 335
            |....|..:..:..|.||.|..|..|...||..         |.|.......|:..:.|||....
Zfish   194 PSTASPPVSSASNDPVGSYSINGILGIPRSNGEKRKRDDVLWSGNHLDGRKIGYYGSDGSGPNSD 258

  Fly   336 SAGSGRLSLPALSPDSGSRDSRSPDADANRMIDIEGEDSESQDSDQPKFRRNRTTFSPEQLDELE 400
            |.|         |.:|..:..|   |||                           |:.:||:.|:
Zfish   259 SQG---------SVESLRKHLR---ADA---------------------------FTQQQLEALD 284

  Fly   401 KEFDKSHYPCV-NTREKLAARTALSEARVQVWFSNRRAKWRRHQRVNLIKQRDSPSTSSSPTPLV 464
            :.|::..||.| .|.|.:....|                                  :....|.:
Zfish   285 RVFERPSYPDVFPTSEHIKPEQA----------------------------------NEYSLPAL 315

  Fly   465 NPVVSPVSPIPVPVPVAVPESGQQKQPYPYSTSNMCNTSSSSSNSQPCNTINPGSKMSSKTSSVS 529
            ||.:..|.|                   ..|||...:..||.|.|.|..|       .|.:||:.
Zfish   316 NPGLDEVKP-------------------SLSTSVSSDLGSSVSQSYPVVT-------ESHSSSMC 354

  Fly   530 SNQHMEEPAAAVATASPTASAPLSMGGENSAFRALPMTLPMPMTLPTASAAAF---ALSFARQYI 591
            ..|...|.:.|..|.|..|.:.|:        ..||:...:.:...|....|:   |.|:. ||.
Zfish   355 VKQEPHEASLAPFTPSSLAVSGLA--------ELLPLQPSVSVDASTPCYGAYAHHAPSYC-QYT 410

  Fly   592 AKYM------------GTPLNL---GHGSSPIQAQSG 613
            ::::            |.|.::   |.||.|....:|
Zfish   411 SQHIIAGREMASTTLPGYPPHVPPTGQGSYPTSTLAG 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toeNP_524041.2 HTH 134..230 CDD:304362 58/107 (54%)
Homeobox 388..440 CDD:278475 11/52 (21%)
pax2aXP_021336168.1 PAX 19..150 CDD:128645 64/137 (47%)
Pax2_C 391..500 CDD:315141 13/58 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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