DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toe and Gbx1

DIOPT Version :9

Sequence 1:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_056554.1 Gene:Gbx1 / 231044 MGIID:95667 Length:418 Species:Mus musculus


Alignment Length:524 Identity:134/524 - (25%)
Similarity:180/524 - (34%) Gaps:169/524 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 STSPGPTRTTAAIRVSLPGAAPAIPATATAGS-QSPGAIMPMAA---VPLPSHLQLLGSSAGGVG 64
            |.:|.|.....|.|..|...|.:.|..:..|: :.||:.|..||   .|        |.|.|..|
Mouse    22 SAAPEPHCAEPAPRRHLGPRARSEPCVSARGARRGPGSAMQRAAGGGAP--------GGSGGSSG 78

  Fly    65 QPAA-------ITPVSPTAATTV------------LAQPHSLSPSTPILTQGAPP-------AAA 103
            .|.|       |.|..|.:...:            |..|.:|:|:.  |..|.||       |..
Mouse    79 GPGAAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLPQALAPAP--LPAGLPPLAPLASFAGR 141

  Fly   104 LGGIFCGGSAAAGPGAAAAAATNLNALASQHRLLELSRFGLRGYDLAQHMLSQQGAVSKLLGTLR 168
            |...||.|...|.| :..|..|.|.:.|                                    .
Mouse   142 LSNTFCAGLGQAVP-SMVALTTALPSFA------------------------------------E 169

  Fly   169 PPGLIGGSKPKVATPTVVSKIEQYKRENPTIFAWEIRERLITEGVCTNATAPSVSSINRILRNRA 233
            ||....| .|::|.....:.    .|.||     |...|.....:......|:        |.:.
Mouse   170 PPDAYYG-PPELAAAAASTA----SRSNP-----EPAARRTDGALDAEELLPA--------REKV 216

  Fly   234 AERAAAEFARAASYGYAIHPTHPHPYTSFPTWPAHHPLWGA-VPLATPPGGGPAGAGGALQPGGS 297
            .|...              |..||...:||:.||...::.: .....||.|.|||:  ..:..||
Mouse   217 TEPPP--------------PPPPHFSETFPSLPAEGKVYSSDEEKLEPPAGDPAGS--EQEEEGS 265

  Fly   298 GSSYGSDGNMSSNPNSSNSNTTHSNGHNTNSGSGCGDSSAGSGRLSL---PAL--SPDSGSRDSR 357
            |.                           :|.....|||||.....|   |.|  ||.:|:.:. 
Mouse   266 GG---------------------------DSEDSFLDSSAGGPGALLGPKPKLKGSPGTGAEEG- 302

  Fly   358 SPDADANRMIDIEGEDSESQDSDQPKFRRNRTTFSPEQLDELEKEFDKSHYPCVNTREKLAARTA 422
            :|.|..   :...|          .|.||.||.|:.|||.||||||....|..:..|.::|....
Mouse   303 TPVATG---VTTPG----------GKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALK 354

  Fly   423 LSEARVQVWFSNRRAKWRRHQRVNLIKQRDSPSTSSSPTPLVNPVVSPVSPIPVPV-PVAVPESG 486
            |||.:|::||.||||||:|.:..|:        :|.|..|:.||.:  |.||||.| ..||....
Mouse   355 LSEVQVKIWFQNRRAKWKRIKAGNV--------SSRSGEPVRNPKI--VVPIPVHVNRFAVRSQH 409

  Fly   487 QQKQ 490
            ||.:
Mouse   410 QQME 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toeNP_524041.2 HTH 134..230 CDD:304362 11/95 (12%)
Homeobox 388..440 CDD:278475 26/51 (51%)
Gbx1NP_056554.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..90 21/75 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 214..320 35/162 (22%)
Homeobox 319..372 CDD:278475 26/52 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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