DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment toe and Pax8

DIOPT Version :9

Sequence 1:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_035170.1 Gene:Pax8 / 18510 MGIID:97492 Length:457 Species:Mus musculus


Alignment Length:541 Identity:151/541 - (27%)
Similarity:213/541 - (39%) Gaps:167/541 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 LGGIFCGGSAAAGPGAAAAAATNLNALASQHRLLELSRFGLRGYDLAQHMLSQQGAVSKLL---- 164
            |||.|..|..             |..:..| |:::|:..|:|..|:::.:....|.|||:|    
Mouse    16 LGGAFVNGRP-------------LPEVVRQ-RIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYY 66

  Fly   165 --GTLRPPGLIGGSKPKVATPTVVSKIEQYKRENPTIFAWEIRERLITEGVCTNATAPSVSSINR 227
              |::| ||:|||||||||||.||.||..|||:|||:||||||:||:.||||.|.|.||||||||
Mouse    67 ETGSIR-PGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINR 130

  Fly   228 ILRNRAAE-----RAAAEFARAASYGYAIHPTHPHPYTSFPTWPAHHPLWGAVPLATPPGGGPAG 287
            |:|.:..:     ..:....::.|.|:.:.|:                  .||   |||      
Mouse   131 IIRTKVQQPFNLPMDSCVATKSLSPGHTLIPS------------------SAV---TPP------ 168

  Fly   288 AGGALQPGGSGSSYGSDGNMS-SNPNSSNSNTTHSNGHNTNSGSGCGDSSAGSGRLSLPALSPDS 351
              .:.|....||:|..:|.:. :.|.:.|...             ..||...|.|||:.:.|..|
Mouse   169 --ESPQSDSLGSTYSINGLLGIAQPGNDNKRK-------------MDDSDQDSCRLSIDSQSSSS 218

  Fly   352 GSRDSRSPDADANRMIDIEGEDSESQDSDQPKFRRNRTTFSPEQLDELEKEFDKSHYPCVNTREK 416
            |.|.....|                             |||...|:.||..|::.|||     |.
Mouse   219 GPRKHLRTD-----------------------------TFSQHHLEALECPFERQHYP-----EA 249

  Fly   417 LAA----------------RTALSEARVQVWFSNRRAKWRRHQRVNLIKQRDSPSTSSSPTPLVN 465
            .|:                .:||.:.:..:..||                  :|...:..|....
Mouse   250 YASPSHTKGEQGLYPLPLLNSALDDGKATLTSSN------------------TPLGRNLSTHQTY 296

  Fly   466 PVVS-PVSPIPVPVPVAVPESGQQKQPYPYSTSNMCNTSSSSSNSQPCNTINPGSKMSSKTSSVS 529
            |||: |.||..:            ||..| ..|:..:|.||.|:|...:....||...:..|...
Mouse   297 PVVADPHSPFAI------------KQETP-ELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASVPP 348

  Fly   530 SNQHMEEPAAAVATASPTASAPLSMGGENSAFRALPMTLP-MPMTLPTASAAAFALSFARQYIA- 592
            .|..   |.||......|..|.|| |.|     .:..||| .|..:||:...::|.|.....:| 
Mouse   349 FNAF---PHAASVYGQFTGQALLS-GRE-----MVGPTLPGYPPHIPTSGQGSYASSAIAGMVAG 404

  Fly   593 -KYMGTPLNLGHGSSPIQAQS 612
             :|.|.    .:..:|..:.|
Mouse   405 SEYSGN----AYSHTPYSSYS 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toeNP_524041.2 HTH 134..230 CDD:304362 58/101 (57%)
Homeobox 388..440 CDD:278475 16/67 (24%)
Pax8NP_035170.1 PAX 9..133 CDD:128645 65/131 (50%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 12..68 17/65 (26%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 87..135 34/47 (72%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..224 23/106 (22%)
Pax2_C 344..455 CDD:372091 24/91 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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