DRSC/TRiP Functional Genomics Resources

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Protein Alignment toe and vsx2

DIOPT Version :10

Sequence 1:NP_524041.2 Gene:toe / 39418 FlyBaseID:FBgn0036285 Length:640 Species:Drosophila melanogaster
Sequence 2:XP_004917101.1 Gene:vsx2 / 100493176 XenbaseID:XB-GENE-853775 Length:377 Species:Xenopus tropicalis


Alignment Length:464 Identity:113/464 - (24%)
Similarity:161/464 - (34%) Gaps:170/464 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 ARAASYGYAIH---------PT----HPHPYTSFPTWPAHHPLWGAVPLATPPGGGPAGAG-GAL 292
            |...|.|:.|.         ||    |.||.:     |..|.|             .|.:| |.|
 Frog     9 APVRSTGFGIQEILGLNKEPPTPSQRHLHPLS-----PGTHLL-------------AARSGLGLL 55

  Fly   293 QPGGSGSSYGSDGNMSSNPNSSNSNTTHSNGHNTNSGSGCGDS-SAGSGRLSLPALSPDSGSRDS 356
            ..||..:.|...|.:..:|.......|   |....|.:...|| ...|....||.....|..|..
 Frog    56 AAGGIPTFYTQPGLLLGDPPGPRIQQT---GQEEGSRTCSSDSEDVSSSDRKLPKSLSQSKKRKK 117

  Fly   357 RS---PDADANRMIDIEGEDSESQDSDQPK------------FRRNRTTFSPEQLDELEKEFDKS 406
            |.   |:      |..||        ::||            .|..||.|:..||:||||.|:::
 Frog   118 RRHRYPN------IMFEG--------NRPKIKFGVFTGNKGAIRSFRTIFTSYQLEELEKAFNEA 168

  Fly   407 HYPCVNTREKLAARTALSEARVQVWFSNRRAKWRRHQRV-------------------------N 446
            |||.|..||.||.:|.|.|.|:||||.|||||||:.::.                         :
 Frog   169 HYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPES 233

  Fly   447 LIKQ-RDSPSTSSSPTPLVNPVVSPVSPIPVPVPVAVPE-----SGQQKQPYPYSTSNMCNTSSS 505
            ::|. :|....|.:|..||.      ..:.:|...:.||     :|..|:          ...::
 Frog   234 ILKSAKDGIMESCAPWLLVQ------DGLQMPRRFSKPEYQQFFAGMHKK----------TLEAA 282

  Fly   506 SSNSQPCNTINPGSKMSSKTSSVSSNQHMEEPAAAVATASPTASAPLSMG--GENS--AFRALPM 566
            :...|     .|..:..:..|..::|:..|          |..|||:|..  .|||  |.||.  
 Frog   283 ADRVQ-----QPEREAPALPSQPTANERRE----------PELSAPISEEELRENSIAALRAR-- 330

  Fly   567 TLPMPMTLPTASAAAFALSFARQYIAKYMGTPLNLGHGSSPIQAQSGRDHQSEEREYED------ 625
                                |:::.||.:         .|.....|.|.|::|..|.|:      
 Frog   331 --------------------AQEHSAKVL---------RSTNSETSARKHETENVEEEEKIQRSD 366

  Fly   626 --EQEEEEV 632
              ||:|.:|
 Frog   367 SLEQQEPKV 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
toeNP_524041.2 HTH_ARSR 134..230 CDD:481197
Homeodomain 385..441 CDD:459649 33/55 (60%)
vsx2XP_004917101.1 Homeodomain 147..203 CDD:459649 33/55 (60%)
OAR 318..336 CDD:461067 7/39 (18%)
Blue background indicates that the domain is not in the aligned region.

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