DRSC/TRiP Functional Genomics Resources

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Protein Alignment ArfGAP1 and RPA

DIOPT Version :9

Sequence 1:NP_524040.2 Gene:ArfGAP1 / 39417 FlyBaseID:FBgn0020655 Length:468 Species:Drosophila melanogaster
Sequence 2:NP_565801.1 Gene:RPA / 818088 AraportID:AT2G35210 Length:395 Species:Arabidopsis thaliana


Alignment Length:405 Identity:100/405 - (24%)
Similarity:149/405 - (36%) Gaps:127/405 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VLQELKPQDENSKCFECGTHNPQWVSVTYGIWICLECSGKHRSLGVHLSFVRSVTMDKWKDIELE 73
            |.::||.:.:|..||:|...||.|.||||||::|::||..|||||||:|||||..:|.|...:|:
plant    12 VFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLK 76

  Fly    74 KMKAGGNRNAREFLEDQEDWNERAPITQRYNSKAAALYRDKIA---------------------- 116
            .|..|||..|:.|.: |..|::......:|.|:||.||:..:|                      
plant    77 MMIYGGNNRAQVFFK-QYGWSDGGKTEAKYTSRAADLYKQILAKEVAKSKAEEELDLPPSPPDST 140

  Fly   117 -------------------TLAQGKSWDLKEAQGRV--------GSNNSFSSGG---------SS 145
                               ||.|.:..|:.....|:        |:..:..:||         ||
plant   141 QVPNGLSSIKTSEALKESNTLKQQEKPDVVPVSPRISRSVKKPLGAKKTGKTGGLGARKLTTKSS 205

  Fly   146 NSSYQSRPSATGYGGNGGYQNGGGAEPGGYQQYQTQEFKDQKEEFFSR----RQVENASRPENLP 206
            .:.|..:|.                |....|.......|..:..|.||    ..|:|  |.:.:.
plant   206 GTLYDQKPE----------------ESVIIQATSPVSAKSARSSFSSRFDYADNVQN--REDYMS 252

  Fly   207 PSQGGKYAGFGFTREPPPKTQSQELFDSTLSTLASGWSLFSTNASKLASTAKEKAVTTVNLASTK 271
            |......|        |||  |...|:..|          ..|..:.    ::|.:|    :|:|
plant   253 PQVVSHVA--------PPK--SSGFFEEEL----------EMNGGRF----QKKPIT----SSSK 289

  Fly   272 IKEGTLLDSVQCGVTDVASKVTDMGKRGWNNLAGSNISSPQGGYNDPNFEDSSAYQRSNSVGGNL 336
            ::                .:.||..::.:.|  ..:|||.|...||.|..|..|........|:.
plant   290 LQ----------------IQETDEARKKFTN--AKSISSAQYFGNDNNSADLEAKSSLKKFSGSS 336

  Fly   337 AGGLGQQSGVSDSDW 351
            |.......|..|.|:
plant   337 AISSADLFGDGDGDF 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArfGAP1NP_524040.2 ArfGap 7..114 CDD:279720 48/104 (46%)
RPANP_565801.1 PLN03114 1..395 CDD:178661 100/405 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1155557at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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