DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ArfGAP1 and Git2

DIOPT Version :9

Sequence 1:NP_524040.2 Gene:ArfGAP1 / 39417 FlyBaseID:FBgn0020655 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_006530402.1 Gene:Git2 / 26431 MGIID:1347053 Length:761 Species:Mus musculus


Alignment Length:533 Identity:107/533 - (20%)
Similarity:170/533 - (31%) Gaps:144/533 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 CFECGTHNPQWVSVTYGIWICLECSGKHRSLGVHLSFVRSVTMDKWKDIELEKMKAGGNRNAREF 86
            |.:|...:|.|.||..|.:||.||...|||||.|:|.||.:....|....|:.::...|..|...
Mouse    11 CADCNGPDPSWASVNRGTFICDECCSVHRSLGRHISQVRHLKHTAWPPTLLQMVETLYNNGANSI 75

  Fly    87 LEDQ-------EDWNERAPITQRYNSKAAALYRDKIATLA-----------QGKSWDL-KEAQGR 132
            .|..       .....:|....:.:...|...|.|...||           ...:.|| |:....
Mouse    76 WEHSLLDPASIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVHRLPCREDDSVTAKDLSKQLHSS 140

  Fly   133 VGSNN------SFSSGGSSNSSYQSRPSA-----------------TGYGGNGGYQNGGGAEP-- 172
            |.:.|      ..|.|..:|..:..:.|.                 ..||.:.|.|:..|..|  
Mouse   141 VRTGNLETCLRLLSLGAQANFFHPEKGSTPLHVASKAGQILQAELLAVYGADPGTQDSSGKTPVD 205

  Fly   173 ----GGYQQYQTQ------EFKDQKEEFFSRRQVENASRPENLPPSQGGKYAGFGFTREPPPKTQ 227
                ||:.:...:      |..|:...:...|:.::.|....|.|.:..:               
Mouse   206 YARQGGHHELAERLIEIQYELTDRLAFYLCGRKPDHKSGQHFLIPQRADR--------------- 255

  Fly   228 SQELFDSTLSTLASGWSLFSTNASKLASTAKEKAVTTVNLASTKIKEGTLLDSVQCGVTD-VASK 291
                             ..|.:.|:||..||:|..:..|         .|.:.:...|.| |..:
Mouse   256 -----------------RLSLDLSELAKAAKKKLQSLSN---------HLFEELAMDVYDEVDRR 294

  Fly   292 VTD---MGKRGWNNLAGSNISSP-------------QGGYNDPNFEDSSAYQRSNSVGGNLAGGL 340
            .||   :..:..:.|.......|             ||......|   :|::.:..|...|:...
Mouse   295 ETDAVWLATQNHSTLVTETTVVPFLPVNPEYSSTRNQGRQKLARF---NAHEFATLVIDILSDAK 356

  Fly   341 GQQSGVSDSDWGGWQDNGN------SKSHMTSSS-----SYHNQLSS-----SSGGGTASAGLTR 389
            .:|.|   |.....:||..      |..|.|.|.     .|.:..|.     .:....|:...:.
Mouse   357 RRQQG---SPLSRSKDNVELILRTVSTQHSTESQDNDQPDYDSVASDEDTDVETRASKANRQKSL 418

  Fly   390 DADWSGFEATNYQSSETSYQNASSGGSTARR------NMKLQDTSQKLSEGFESLDVK-SVKPKT 447
            |:|.|....|..:..|.   .::...|.|:|      |..|.|..:.:.:..::|..: |...:.
Mouse   419 DSDLSDGPVTVQEFMEV---KSALVASEAKRQQLMKVNNNLSDELRIMQKKLQTLQSENSSLRRQ 480

  Fly   448 ATASSANKGTAED 460
            ||||:....|..|
Mouse   481 ATASACQVQTGSD 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArfGAP1NP_524040.2 ArfGap 7..114 CDD:279720 28/98 (29%)
Git2XP_006530402.1 ArfGap_GIT2 1..111 CDD:350072 28/99 (28%)
Ank_2 137..229 CDD:372319 15/91 (16%)
ANK repeat 137..165 CDD:293786 5/27 (19%)
ANK repeat 167..197 CDD:293786 4/29 (14%)
GIT_SHD 268..296 CDD:369921 8/36 (22%)
GIT_SHD 332..360 CDD:369921 5/30 (17%)
GIT_CC 416..480 CDD:374629 13/66 (20%)
GIT1_C 640..754 CDD:371961
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5347
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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