DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ArfGAP1 and adap2

DIOPT Version :9

Sequence 1:NP_524040.2 Gene:ArfGAP1 / 39417 FlyBaseID:FBgn0020655 Length:468 Species:Drosophila melanogaster
Sequence 2:XP_021329475.1 Gene:adap2 / 100331455 ZFINID:ZDB-GENE-070912-21 Length:418 Species:Danio rerio


Alignment Length:156 Identity:47/156 - (30%)
Similarity:71/156 - (45%) Gaps:34/156 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RTRRVLQELKPQDENSKCFECGTHNPQWVSVTYGIWICLECSGKHRSLGVHLSFVRSVTMDKWKD 69
            :.:::|.||....||:.|.:||..:|.|.|...||::||.|||.||:|.. :|.::|:.:|.|.|
Zfish     6 KNKKILLELVKLPENNCCADCGAADPDWASCKLGIFVCLTCSGTHRNLPT-ISRIKSIRLDFWDD 69

  Fly    70 IELEKMKAGGNRNAREFLED-----------------QEDW----NERAPITQRYNSKAAALYRD 113
            ..::.|||.||.:|:.|.|.                 :|.|    .||...|:....      |.
Zfish    70 ELVQFMKANGNCSAKNFYEKCVPVFYYRPHPHDCEVLREQWIRAKYERMEFTEEKTE------RP 128

  Fly   114 KIATLAQGKSWDLKEAQGRVGSNNSF 139
            ..|.:.:|..|    .:||  .|..|
Zfish   129 YTADVYEGMLW----KKGR--DNGQF 148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArfGAP1NP_524040.2 ArfGap 7..114 CDD:279720 40/127 (31%)
adap2XP_021329475.1 ArfGap 8..123 CDD:307528 39/115 (34%)
PH1_ADAP 134..240 CDD:270072 6/21 (29%)
PH2_ADAP 254..361 CDD:241282
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.