DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCaMC and Slc25a42

DIOPT Version :9

Sequence 1:NP_729802.1 Gene:SCaMC / 39415 FlyBaseID:FBgn0052103 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_001007571.1 Gene:Slc25a42 / 73095 MGIID:1920345 Length:318 Species:Mus musculus


Alignment Length:293 Identity:93/293 - (31%)
Similarity:162/293 - (55%) Gaps:31/293 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   289 LVAGGIAGAVSRTCTAPLDRIKVYLQVQTQRMGISECMHIM----LNEGGSRSMWRGNGINVLKI 349
            |::|.:|||:::|..|||||.|:..||.::|....|...::    ||| |..|:||||...::::
Mouse    37 LLSGALAGALAKTAVAPLDRTKIIFQVSSKRFSAKEAFRLLYFTYLNE-GFLSLWRGNSATMVRV 100

  Fly   350 APETAFKFAAYEQMKRLIRGDDGSRQMSIV--ERFYAGAAAGGISQTIIYPMEVLKTRLALRRTG 412
            .|..|.:|:|:|:.||::....|.|..::.  .|..|||.||..:.::.||:::::.|:|:....
Mouse   101 IPYAAIQFSAHEEYKRILGHYYGFRGEALPPWPRLLAGALAGTTAASLTYPLDLVRARMAVTPKE 165

  Fly   413 QYAGIADAAVKIYKQEGVRSFYRGYVPNILGILPYAGIDLAVYETLKRRYIANHDNNEQPSFLVL 477
            .|:.|....::|.::||:::.|.|:.|.:||::||||:....||:||..: ..:....||.....
Mouse   166 MYSNIFHVFIRISREEGLKTLYFGFTPTVLGVIPYAGLSFFTYESLKSLH-REYSGRPQPYPFER 229

  Fly   478 LACGSTSSTLGQLCSYPLALVRTRLQAQAAETIANQKRKTQIPLKSSDAHSGEE--TMTGLFRKI 540
            :..|:.:..:||..||||.:||.|:|....                    :|.:  ::....|.|
Mouse   230 MVFGACAGLIGQSASYPLDVVRRRMQTAGV--------------------TGHQHGSILSTLRSI 274

  Fly   541 VRQEG-LTGLYRGITPNFLKVLPAVSISYVVYE 572
            ||:|| :.|||:|::.|:||...||.||:..::
Mouse   275 VREEGAVRGLYKGLSMNWLKGPIAVGISFTTFD 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCaMCNP_729802.1 FRQ1 100..247 CDD:227455
EFh 116..176 CDD:238008
EFh 186..242 CDD:238008
Mito_carr 285..370 CDD:278578 32/84 (38%)
Mito_carr 375..463 CDD:278578 28/89 (31%)
Mito_carr 470..581 CDD:278578 31/106 (29%)
Slc25a42NP_001007571.1 Solcar 1 31..117 31/80 (39%)
PTZ00169 34..295 CDD:240302 88/279 (32%)
Solcar 2 129..214 28/84 (33%)
Solcar 3 224..312 30/104 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1887
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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