DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCaMC and F55A11.4

DIOPT Version :9

Sequence 1:NP_729802.1 Gene:SCaMC / 39415 FlyBaseID:FBgn0052103 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_001256365.1 Gene:F55A11.4 / 186276 WormBaseID:WBGene00010077 Length:535 Species:Caenorhabditis elegans


Alignment Length:596 Identity:268/596 - (44%)
Similarity:368/596 - (61%) Gaps:76/596 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVRKQVGIENSASLAVSKQQDQKEQ-------DYKPEDQKQQHIDIDLTPDPASNFNFAQQAQAN 58
            |:.|....|:::..|..|:.|:::.       :||.|          :||               
 Worm     1 MINKNEQTESTSGAAEQKEDDEEQYVQLSSLGEYKDE----------VTP--------------- 40

  Fly    59 YSARTLAASYEHGQNLGLQHAHLATSSTTNTPLAYDLHEVASSGSILPTEIPIEDEERLERIFNK 123
                          .|..:|..|.....|. ..|...|.....|      :..|.|.::..|:::
 Worm    41 --------------LLSPKHVPLVLGKVTK-EAAIATHSALHGG------MSEEKERQIRDIYDR 84

  Fly   124 LDRDGDGRIDIHDLSAAL-HEF-GLSSVYAEKFLQQSDKDQSGNVGFAEFLHYVREHEKNLVLQF 186
            ||.|.||.|||.||:.|| ||. .:.:..|...:.:...|..|.|.|..|..||.|:|:.|...|
 Worm    85 LDIDNDGTIDIRDLTLALKHETPHIPANLAPVIMSKMSPDDEGRVDFYSFSSYVLENEQKLAEMF 149

  Fly   187 SHLDKNRDGKVDLEELISAFKDLGLDIDMDEARNLLTRMDKDGSLNISFNEWRDFMLLAPSTDIH 251
            :.:|:|.||.||:.|:.:..||:|:.:|..:|::::.:||:.||.::...|:::||:|.||:|:.
 Worm   150 ADMDRNHDGLVDVVEMKNYCKDIGVPLDDHKAQHIVNKMDQTGSASVDLKEFQEFMMLYPSSDLK 214

  Fly   252 DLIKFWRHSTYLDIGEDMNVPDDFTQKEMQTGLWWRHLVAGGIAGAVSRTCTAPLDRIKVYLQV- 315
            |::.||||:..:|||||..:|:||:|:|||.|:|||||||||.|||||||||||.||||||||| 
 Worm   215 DIVDFWRHNLIIDIGEDSQIPEDFSQQEMQEGIWWRHLVAGGAAGAVSRTCTAPFDRIKVYLQVN 279

  Fly   316 --QTQRMGISECMHIMLNEGGSRSMWRGNGINVLKIAPETAFKFAAYEQMKRLIRGDDGSRQMSI 378
              :|.|:|:..|:.::..|||.:|.||||||||:|||||:|.||..|:|:||||:...|:.::|.
 Worm   280 SSKTNRLGVMSCLKLLHAEGGIKSFWRGNGINVIKIAPESAIKFMCYDQLKRLIQKKKGNEEIST 344

  Fly   379 VERFYAGAAAGGISQTIIYPMEVLKTRLALRRTGQY-AGIADAAVKIYKQEGVRSFYRGYVPNIL 442
            .||..||:|||.|||:.||||||:|||||||:|||. .||...|.|:|.:||:|.||:||:||::
 Worm   345 FERLCAGSAAGAISQSTIYPMEVMKTRLALRKTGQLDRGIIHFAHKMYTKEGIRCFYKGYLPNLI 409

  Fly   443 GILPYAGIDLAVYETLKRRYIANHD-NNEQPSFLVLLACGSTSSTLGQLCSYPLALVRTRLQAQA 506
            ||:||||||||:||||||.|:..:: |:.:|..|.|||||:.|||.|||.|||.|||||||||.:
 Worm   410 GIIPYAGIDLAIYETLKRTYVRYYETNSSEPGVLALLACGTCSSTCGQLSSYPFALVRTRLQALS 474

  Fly   507 AETIANQKRKTQIPLKSSDAHSGEETMTGLFRKIVRQEGLTGLYRGITPNFLKVLPAVSISYVVY 571
            ....:.|                .:||.|.|:.|::.||:||.|||||||||||:||||||||||
 Worm   475 ITRYSPQ----------------PDTMFGQFKYILQNEGVTGFYRGITPNFLKVIPAVSISYVVY 523

  Fly   572 EYTSRALGIKM 582
            |.....||:||
 Worm   524 EKVRTGLGVKM 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCaMCNP_729802.1 FRQ1 100..247 CDD:227455 50/148 (34%)
EFh 116..176 CDD:238008 22/61 (36%)
EFh 186..242 CDD:238008 18/55 (33%)
Mito_carr 285..370 CDD:278578 59/87 (68%)
Mito_carr 375..463 CDD:278578 57/88 (65%)
Mito_carr 470..581 CDD:278578 59/110 (54%)
F55A11.4NP_001256365.1 FRQ1 70..211 CDD:227455 50/140 (36%)
EFh 77..165 CDD:298682 33/87 (38%)
EFh 144..206 CDD:238008 20/61 (33%)
Mito_carr 248..337 CDD:278578 59/88 (67%)
Mito_carr 340..433 CDD:278578 58/92 (63%)
Mito_carr 438..531 CDD:278578 57/108 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167696
Domainoid 1 1.000 128 1.000 Domainoid score I3304
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H62165
Inparanoid 1 1.050 496 1.000 Inparanoid score I763
Isobase 1 0.950 - 0 Normalized mean entropy S1460
OMA 1 1.010 - - QHG55854
OrthoDB 1 1.010 - - D333952at33208
OrthoFinder 1 1.000 - - FOG0000464
OrthoInspector 1 1.000 - - otm14429
orthoMCL 1 0.900 - - OOG6_100689
Panther 1 1.100 - - O PTHR24089
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1887
SonicParanoid 1 1.000 - - X287
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.890

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