DRSC/TRiP Functional Genomics Resources

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Protein Alignment SCaMC and slc-25A42

DIOPT Version :9

Sequence 1:NP_729802.1 Gene:SCaMC / 39415 FlyBaseID:FBgn0052103 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_492333.1 Gene:slc-25A42 / 172656 WormBaseID:WBGene00009666 Length:294 Species:Caenorhabditis elegans


Alignment Length:298 Identity:107/298 - (35%)
Similarity:161/298 - (54%) Gaps:32/298 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   289 LVAGGIAGAVSRTCTAPLDRIKVYLQVQTQRMGIS-----ECMHIMLNEGGSRSMWRGNGINVLK 348
            |.||.||||:::|..|||||.|:|.||.:.| |.|     :.:.:...|.|..:::|||...:.:
 Worm    18 LSAGAIAGALAKTTIAPLDRTKIYFQVSSTR-GYSFRSAIKFIKLTYRENGFFALYRGNSATMAR 81

  Fly   349 IAPETAFKFAAYEQMKRLIRGDD-GSRQMSIVERFYAGAAAGGISQTIIYPMEVLKTRLALRRTG 412
            :.|..:.:|||:||.|:|::.|: |||  :.|:|:..|:.|...:..|.||::..|.||::....
 Worm    82 VVPYASMQFAAFEQYKKLLKVDENGSR--TPVKRYITGSLAATTATMITYPLDTAKARLSVSSKL 144

  Fly   413 QYAGIADAAVKIYKQEGVRSFYRGYVPNILGILPYAGIDLAVYETLKRRYIANHDNNEQPSFLVL 477
            ||:.:....||.||:.|::..|||..|.|||::||||.....|||||..| .:|....:.|:..:
 Worm   145 QYSSLKHVFVKTYKEGGIQLLYRGIYPTILGVIPYAGSSFFTYETLKIMY-RDHRGEVENSYYRM 208

  Fly   478 LACGSTSSTLGQLCSYPLALVRTRLQAQAAETIANQKRKTQIPLKSSDAHSGEETMTGLFRKIVR 542
            | .|..:..:||..||||.:||.|:|.            .:||       ||...:..|.. |..
 Worm   209 L-FGMLAGLIGQSSSYPLDIVRRRMQT------------GRIP-------SGWSPLRALIH-IYH 252

  Fly   543 QEGL-TGLYRGITPNFLKVLPAVSISYVVYEYTSRALG 579
            .||| .|||:|::.|:||...||.:|:..||.....:|
 Worm   253 TEGLKRGLYKGLSMNWLKGPIAVGVSFTTYEKVLELVG 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SCaMCNP_729802.1 FRQ1 100..247 CDD:227455
EFh 116..176 CDD:238008
EFh 186..242 CDD:238008
Mito_carr 285..370 CDD:278578 33/85 (39%)
Mito_carr 375..463 CDD:278578 33/87 (38%)
Mito_carr 470..581 CDD:278578 35/111 (32%)
slc-25A42NP_492333.1 PTZ00169 8..271 CDD:240302 100/277 (36%)
Mito_carr 10..100 CDD:278578 32/82 (39%)
Mito_carr 106..198 CDD:278578 37/94 (39%)
Mito_carr 203..291 CDD:278578 35/109 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1887
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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