DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-2 and smyd5

DIOPT Version :9

Sequence 1:NP_648574.1 Gene:Smyd4-2 / 39414 FlyBaseID:FBgn0036282 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001004614.2 Gene:smyd5 / 447875 ZFINID:ZDB-GENE-040912-39 Length:415 Species:Danio rerio


Alignment Length:392 Identity:78/392 - (19%)
Similarity:133/392 - (33%) Gaps:108/392 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 VGASKVVRLVETK----DKGRFVVANEGLRTGDVLLFEEPVAA---CLEPSYFGTHCHHCFKRLH 307
            |.::|....|:.:    .||:.:.|.:..:.||.:..|.|:.:   .....|....|.:|.:.|.
Zfish    13 VDSAKASNCVDVRFINNVKGKGLFAKKPFKKGDTIFIERPLVSSQFLWNALYKYRACEYCLRALE 77

  Fly   308 T-----------PV-----------------SCLHCSGIAFCSAQCMGEACSSYHRFEC------ 338
            |           |.                 :|..|. :.:||::|...|...||:..|      
Zfish    78 TAEENARRLSGLPALILPHPELCKVRPDRHQACPQCQ-VMYCSSECRQAAMDQYHKILCLGPSND 141

  Fly   339 -----------EYMDLMIGSGMSILCFIALRIFT--QAPSLEQGLATANLLFEHLCSHEEDRQPD 390
                       .:..:......|.:..:|..:.|  |....|:.    ..||.:.||...:.: :
Zfish   142 DPDHPVNKLQDAWRSVHFPPETSSVMILAKMVATIKQTQDKERW----QRLFTNFCSRTANEE-E 201

  Fly   391 DYLRRAL------MSGFLLRILQKSLYFGR------------------RKTEGVNPTAVE--LQV 429
            :.:.:.|      ..|.|..:...:||..|                  ...:|:..:::.  :..
Zfish   202 EIVHKLLGEKFQGQLGLLRNLFTTALYEDRLSQWFTPEGFRSLFSLVGTNGQGIGTSSLSQWVHA 266

  Fly   430 ATAL-LGLLQVLQYNA--HQIYQTQVTEEHRF---DGSKTVYLAAGLYGTGSYFNHECWPSTACH 488
            ..|| |...|..|.:|  .|:|:....|...|   :||       ||:...|..||.|.|:....
Zfish   267 CDALELPRQQREQLDAFIDQLYKDIDKETGDFLNCEGS-------GLFLLQSSCNHSCVPNAEAS 324

  Fly   489 FVGKK--LVLTATRPHRANELVAVNYGPIFIKNNLK-ERQRSLRGRYSFSCSCMACQENWPLLQK 550
            |....  |.|||.......|.:.::|.....::..: .|.:.||..|.|.|||..|      |.:
Zfish   325 FPENNFLLHLTALGDIGPGEEICISYLDCCQRDRSRHSRHKILRENYLFICSCQKC------LSQ 383

  Fly   551 LD 552
            :|
Zfish   384 MD 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-2NP_648574.1 TPR_11 142..205 CDD:290150
zf-MYND 299..338 CDD:280009 13/66 (20%)
SET <474..513 CDD:279228 11/40 (28%)
smyd5NP_001004614.2 zf-MYND 100..135 CDD:280009 8/35 (23%)
SET <293..350 CDD:214614 17/63 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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