DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smyd4-2 and smyd1a

DIOPT Version :10

Sequence 1:NP_648574.1 Gene:Smyd4-2 / 39414 FlyBaseID:FBgn0036282 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_991103.2 Gene:smyd1a / 321245 ZFINID:ZDB-GENE-030131-9825 Length:485 Species:Danio rerio


Alignment Length:420 Identity:91/420 - (21%)
Similarity:148/420 - (35%) Gaps:119/420 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 KGRFVVANEGLRTGDVLLFEEPVAACLEPSYFGTHCHHCFKRLHTPVSCLHCSGIAFCSAQCMGE 328
            |||.:.....|..|:|:..|...||.:..|.....||.||:|...|..|..|....:|...|. .
Zfish    17 KGRGLRGTRDLSAGEVVFAEASFAAVVLDSLSLQVCHSCFRRQVNPHRCAQCKFAHYCDRTCQ-R 80

  Fly   329 ACSSYHRFECEYMDLMIGSGMSILCFIALRIFTQAPS--------------------LEQGLATA 373
            |....||.||.                |:|...:||:                    .:..|.|.
Zfish    81 AAWDEHRKECS----------------AIRNIGKAPNENVRLVARILWRIQKHTGLVSDSQLTTL 129

  Fly   374 NLLFEHLCSHEEDRQPDDYLRRALMSGFLLRILQKSLY-FGRRKTEGVNPTAVELQVATALLGLL 437
            ::|.:||     .|...:.|:.       |::..|:.| :..:|::.|....|.        .|.
Zfish   130 DMLEDHL-----SRMTPEDLKE-------LKVDVKTFYTYWPKKSKAVGEDYVS--------HLF 174

  Fly   438 QVLQYNAHQIYQTQVTEEHRFDGSKTVYLAAGLYGTGSYFNHECWPS-------------TACHF 489
            .|:..|...:...:        |.::|  ..||:......||:|||:             .|...
Zfish   175 GVISCNGFTLSDQR--------GLQSV--GIGLFPNLCLVNHDCWPNCTVILNHGDQSALDASFH 229

  Fly   490 VGKKLVLTATRPHRANELVAVNYGPIFIKNNLKERQRSLRGRYSFSCSCMACQENWPLLQKLDKQ 554
            ..:::.|.|..|..|.:.:.|:|  :...:...:|||.|:.:|.|.|.|    |:          
Zfish   230 SSRRIELRALEPISAGQELTVSY--VDFLSVSTDRQRLLQQQYYFDCKC----EH---------- 278

  Fly   555 VRFWCTSANCSNLLKFPKDLAKDVRCPRCRKNISLKE-SVAKMIKIEELYREAARAMEAQKTVEA 618
                |.:.....|:...|. .:|.:.|.......|.: |:..::||     |||||.  ....|.
Zfish   279 ----CVNGTKDELMTAVKP-TEDGKQPSAEVVKQLTDFSLQALVKI-----EAARAQ--GNFHEV 331

  Fly   619 IELFKESLDMFFQVAALPHKDTIVAQQSLH 648
            |.:.:|.|:         .:|.:.|..::|
Zfish   332 IRICRECLE---------KQDPVFADTNVH 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-2NP_648574.1 BepA 87..205 CDD:443813
SET_SMYD4 249..541 CDD:380934 69/310 (22%)
zf-MYND 299..338 CDD:460312 13/38 (34%)
smyd1aNP_991103.2 SET 9..279 CDD:394802 70/328 (21%)
zf-MYND 52..90 CDD:460312 13/38 (34%)
FxSxx_TPR <321..435 CDD:468560 11/43 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.