DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-2 and Smyd1

DIOPT Version :9

Sequence 1:NP_648574.1 Gene:Smyd4-2 / 39414 FlyBaseID:FBgn0036282 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001100065.1 Gene:Smyd1 / 297333 RGDID:1305105 Length:490 Species:Rattus norvegicus


Alignment Length:394 Identity:84/394 - (21%)
Similarity:143/394 - (36%) Gaps:77/394 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 VGASKVVRLVETKDKGRFVVANEGLRTGDVLLFEEPVAACLEPSYFGTHCHHCFKRLHTPVSCLH 314
            ||:.:.|.:..::.|||.:.|.:.....||:..|...:|.:..|.....||.||||......|..
  Rat     3 VGSMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQERLHRCGQ 67

  Fly   315 CSGIAFCSAQCMGEACSSYHRFECEYM---DLMIGSGMSILCFIALRIFTQAPSLEQG-LATANL 375
            |....:|...|..:|..: |:.||..:   ..:....:.:...|..|:..:...|.:| |.:.:.
  Rat    68 CKFAHYCDRTCQKDAWLN-HKNECSAIKRYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDD 131

  Fly   376 LFEHLCSHEEDRQPDDYLRRALMSGFLLRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVL 440
            |..|:....|:.|.:   .|..:..||.....:|..|             .:|..:.:.|   |:
  Rat   132 LQNHVEHFGEEEQKE---LRVDVDTFLQYWPPQSQQF-------------SMQYISHIFG---VI 177

  Fly   441 QYNAHQIYQTQVTEEHRFDGSKTVYLAAGLYGTGSYFNHECWPSTACHF-------------VGK 492
            ..|...:...:        |.:.|  ..|::......||:|||:....|             ...
  Rat   178 NCNGFTLSDQR--------GLQAV--GVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQM 232

  Fly   493 KLVLTATRPHRANELVAVNYGPIFIKNNLKERQRSLRGRYSFSCSCMACQENWP----LLQKLDK 553
            ::.|.|.......|.:.|:|  |...:..:||::.|:.:|.|.|||..||:...    |..|.|.
  Rat   233 RIELRALGKISEGEELTVSY--IDFLHLSEERRQQLKKQYYFDCSCEHCQKGLKDDLFLAVKEDP 295

  Fly   554 QVRFWCTSANCSNLLKFPKDLAKDVRCPRCRKNISLKESVAKMIKIEELYREAAR----AMEAQK 614
            :.    :......:.:|.||..:.:...|.                |.||.|..:    .:|.|:
  Rat   296 KP----SQEVVKEMTQFSKDTLEKIDKARS----------------EGLYHEVVKLCRECLEKQE 340

  Fly   615 TVEA 618
            .|.|
  Rat   341 PVFA 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-2NP_648574.1 TPR_11 142..205 CDD:290150
zf-MYND 299..338 CDD:280009 12/38 (32%)
SET <474..513 CDD:279228 10/51 (20%)
Smyd1NP_001100065.1 zf-MYND 52..90 CDD:280009 12/38 (32%)
SET <194..257 CDD:214614 13/64 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342725
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X437
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.740

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