DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-2 and Smyd2

DIOPT Version :9

Sequence 1:NP_648574.1 Gene:Smyd4-2 / 39414 FlyBaseID:FBgn0036282 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_996733.1 Gene:Smyd2 / 289372 RGDID:727785 Length:433 Species:Rattus norvegicus


Alignment Length:412 Identity:85/412 - (20%)
Similarity:126/412 - (30%) Gaps:139/412 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 KGRFVVANEGLRTGDVLLFEEPVAAC-LEPSYFGTHCHHCFKRLHTPVSCLHCSGIAFCSAQCMG 327
            |||.:.|......|| |||..|..|| |.....|.||..||.|......|..|....:|..:|..
  Rat    17 KGRGLRALRPFHVGD-LLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQK 80

  Fly   328 EACSSYHRFECEYMDLMIGSGMSILCFIALRIFTQAPSLEQGLATANLLFEHLCSHEEDRQPDDY 392
            |.. ..|:.||..| ::.|                                      |:..|.:.
  Rat    81 EDW-PLHKLECSSM-VVFG--------------------------------------ENWNPSET 105

  Fly   393 LRRALMSGFLLRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVLQYNAH---------QIY 448
            :|      ...|||.|......|               |....||.|.::.:|         .:.
  Rat   106 VR------LTARILAKQKMHPER---------------TPSEKLLAVREFESHLDKLDNEKKDLI 149

  Fly   449 QTQVTEEHRF--------DGSKTV-------------------YLAAGLYGTGSYFNHECWPSTA 486
            |:.:...|:|        |.|..|                   :|.:.::...:..||.|.|:..
  Rat   150 QSDIAALHQFYSKHLEFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVI 214

  Fly   487 CHFVGKKLVLTATRPHRANELVAVNYGPIFIKNNLKERQRSLRGRYSFSCSCMACQENWPLLQKL 551
            ..:.|....:.|.:.....:.|..:|  |.:....::|...||..|.|:|.|..|...       
  Rat   215 VTYKGTLAEVRAVQEIHPGDEVFTSY--IDLLYPTEDRNDRLRDSYFFTCECRECTTK------- 270

  Fly   552 DKQVRFWCTSANCSNLLKFPKDLAKDVRCPRCRK--NISLKESVAKMIK-----IEELYREAARA 609
                               .||.||    ...||  |....|::..|::     ||| :|.|...
  Rat   271 -------------------DKDKAK----VEIRKLSNPPQAEAIRDMVRYARNVIEE-FRRAKHY 311

  Fly   610 MEAQKTVEAIELFKESLDMFFQ 631
            ....:.:|..||.:|.:...|:
  Rat   312 KSPSELLEICELSQEKMSSVFE 333

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Smyd4-2NP_648574.1 TPR_11 142..205 CDD:290150
zf-MYND 299..338 CDD:280009 10/38 (26%)
SET <474..513 CDD:279228 7/38 (18%)
Smyd2NP_996733.1 SET_SMYD2 7..269 CDD:380979 66/315 (21%)
S-adenosyl-L-methionine binding. /evidence=ECO:0000250 17..19 1/1 (100%)
zf-MYND 52..90 CDD:396356 10/38 (26%)
Peptide substrate binding. /evidence=ECO:0000250 183..185 0/1 (0%)