DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-2 and set-10

DIOPT Version :9

Sequence 1:NP_648574.1 Gene:Smyd4-2 / 39414 FlyBaseID:FBgn0036282 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_493620.2 Gene:set-10 / 185237 WormBaseID:WBGene00009370 Length:430 Species:Caenorhabditis elegans


Alignment Length:345 Identity:76/345 - (22%)
Similarity:146/345 - (42%) Gaps:70/345 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 EEPVAACLEPSYFGTHCHHCFKRLHTP-----VSCLHCSGIAFCSAQCMGEACSSYHRFECEYMD 342
            |:|:||.|.|.:...:|..||..:.:.     ::|..|..:::|:.:|..:...|.|:||||.:.
 Worm     7 EQPLAAVLSPQFSELYCATCFLEIDSSQETEILTCDDCLAVSYCTLKCQRKDWKSCHQFECEILR 71

  Fly   343 LMIGSG--MSILCFIALRIF-----TQAPSLEQGLATANLLFEHL-CSHEEDRQPDDYLRRALMS 399
            .. ||.  |::...:.:|:.     ||.||..      ..:.|.| .:::|.|...::      :
 Worm    72 CQ-GSSTPMTLTMKLCIRVLLASRSTQTPSFN------GAVLEDLETNYKEFRSSPEH------N 123

  Fly   400 GFL---LRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVLQYNAHQIYQTQVTEEHRFDGS 461
            .||   |.|:..|       .:.:.||::|   ....:|::..:..|:..|...:..|.      
 Worm   124 QFLSDVLTIISSS-------GQNIFPTSLE---TNKTIGIICSVLCNSFSIINEKRVEP------ 172

  Fly   462 KTVYLAAGLYGTGSYFNHECWPSTACHFVGKKLVLTATRPHRANELVAVNYGPIFIKNNLKERQR 526
                :.:|||...:..||.|..::...|.|.::.|...:...:.|| .::|....:..:  ||::
 Worm   173 ----IGSGLYVGVAKHNHSCASTSHVVFEGNQVFLRTNQEEYSKEL-TISYVSRMLPTS--ERRK 230

  Fly   527 SLRGRYSFSCSCMACQ-ENWPLLQKLDKQVRFWCTSANCSNLLKFPKDLAKDVRCPRCRK--NIS 588
            ::||.:..:|.|..|: |...|:....|     |.:.||:..:|      ....|..|.|  .:.
 Worm   231 TIRGVHFLTCQCEMCKNEELDLIGLSSK-----CRTKNCTGFVK------GSGNCSVCEKLAFLP 284

  Fly   589 LKESVAKMIK----IEELYR 604
            .::|:...:.    ||.|::
 Worm   285 FEQSIHSTLNLLDIIENLHK 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-2NP_648574.1 TPR_11 142..205 CDD:290150
zf-MYND 299..338 CDD:280009 10/43 (23%)
SET <474..513 CDD:279228 8/38 (21%)
set-10NP_493620.2 zf-MYND 23..67 CDD:366792 10/43 (23%)
SET 57..247 CDD:394802 49/225 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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