DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-2 and set-14

DIOPT Version :9

Sequence 1:NP_648574.1 Gene:Smyd4-2 / 39414 FlyBaseID:FBgn0036282 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_496323.1 Gene:set-14 / 174662 WormBaseID:WBGene00011068 Length:429 Species:Caenorhabditis elegans


Alignment Length:406 Identity:78/406 - (19%)
Similarity:140/406 - (34%) Gaps:110/406 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   281 LFEEPVAACLEPSYFGTHCHHCFKRLHTPVSCLHCSGIAFCSAQCMGEACSSYHRFECEYM---D 342
            |.|...|..|......::|:.|...:.....|..|..:|:||.:|. .|....|:.||:.:   :
 Worm     8 LHENVYAFALARDQVESYCNQCLTSMAELKKCSACRRLAYCSQECQ-RADWKLHKVECKAIKTHN 71

  Fly   343 LMIGSGMSILCFIALRIFTQAPSLEQGLATANLL------FEHLCSHEEDRQPDDYLRRALMSGF 401
            .:....:.::    :||..:....|.|...|..:      |::|..|......|:       ..|
 Worm    72 EVANDSIRLV----MRIAGKLSRNEDGEIEAYYIPGVARNFQNLEHHPSSYDADE-------ESF 125

  Fly   402 LLRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVLQYNAHQIYQTQVTEEHRFDGSKTVY- 465
            :....|.::        ..:|....:::      :.|.:..|:..:            |:.|.. 
 Worm   126 VKEYFQFAI--------APHPDRDLIKL------IFQKVSINSFVV------------GNSTGNP 164

  Fly   466 LAAGLYGTGSYFNHECWPSTACHFVGKKLVLTATRPHRANELVAVNYGPI--FIKNNLKE--RQR 526
            :..||....|..||.|.|.|...:..:..:|...    ::||.:...|..  :|...:..  |:.
 Worm   165 IGVGLCIKLSAANHSCKPLTRVCYRNRTAMLVPV----SSELPSTLEGACHSYIDELMPRDMRRD 225

  Fly   527 SLRGRYSFSCSCMACQENWPLLQKLDKQVRF--WCTSANCSNLLKFPKDLAKDVRCPRCRKNISL 589
            :|:.:|.|.|.|..|.:.       |:..|.  |    .|...:|......::.:|..|...:| 
 Worm   226 TLKKKYKFLCQCDGCLDE-------DRNARMEAW----TCGICVKGWMRNKENGQCELCGWTMS- 278

  Fly   590 KESVAKMIKIEELYR---EAARAMEAQKTVEAI------ELFKESLDMFFQVAALPHKDTIVAQQ 645
            |:..       ||.|   ||..|..::...:||      .|.::.||:|              |.
 Worm   279 KDHF-------ELCRTAEEAGIAARSRLANDAIPLETKRNLCEKLLDLF--------------QD 322

  Fly   646 SLH----------KCL 651
            :||          :||
 Worm   323 TLHDHNVHRIPVLRCL 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-2NP_648574.1 TPR_11 142..205 CDD:290150
zf-MYND 299..338 CDD:280009 10/38 (26%)
SET <474..513 CDD:279228 9/38 (24%)
set-14NP_496323.1 zf-MYND 26..64 CDD:280009 10/38 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2084
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X437
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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