DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-2 and set-18

DIOPT Version :10

Sequence 1:NP_648574.1 Gene:Smyd4-2 / 39414 FlyBaseID:FBgn0036282 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_871849.1 Gene:set-18 / 172949 WormBaseID:WBGene00044070 Length:507 Species:Caenorhabditis elegans


Alignment Length:394 Identity:86/394 - (21%)
Similarity:147/394 - (37%) Gaps:86/394 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   279 VLLFEEPVAACLEPSYFGTHCHHCFKRLHTPVSCLHCSGIAF---CSAQCMGEACSSYHRFECEY 340
            :.:||.|.|..:........|.:|.:........|.|.|..|   ||.:|...|. ..|:.||:.
 Worm    29 IKIFETPFATQVLNPKVSEFCANCLRGPAPGEKLLRCGGCNFSMYCSKECQATAW-LVHKPECKR 92

  Fly   341 MDLMIGS-GMSILCFIALRIFTQAPSLEQ-----GLATANLLFEHLCSHEEDRQPDDYLRRALMS 399
            :.....: .::.:.|:: ::..:...||:     |: .|...|..|..|:.|.:.|:    ..|:
 Worm    93 LKASFPNLPLTEVLFLS-KVIDRIQFLEKNGDKLGI-EAERKFSSLVDHKVDIRDDE----EKMA 151

  Fly   400 GFLLRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVLQYNAHQIYQTQVTEEHRFDGSKTV 464
            .| .:|.:|   .|..:.|       |:........:......|:|.|:.....|         |
 Worm   152 HF-EKIFEK---MGAFRGE-------EMIEKGEFFDVFCKATINSHSIHTNAGNE---------V 196

  Fly   465 YLAAGLYGTGSYFNHECWPSTACHFVGKKLVLTATRP---HRANELVAVNYGPIFIKNNLKERQR 526
            .:|..| |...| ||.|.|:.:..|.|.::.|....|   ....|...::|  |.:..:...|:|
 Worm   197 GMALDL-GVSKY-NHSCRPTCSMVFDGYRVCLRPLVPGVDAENTEEAFISY--IDVGRSKYIRRR 257

  Fly   527 SLRGRYSFSCSCMACQENWPLLQKLDKQVRFWCTSANCSNLLKFPKDLA-KDVRC--PRCRKNIS 588
            .|..|:.|:|.|..|.:                           |:|.| ..:||  |.|...|.
 Worm   258 DLNSRWYFNCECTRCMD---------------------------PEDDALTAIRCANPACDAPIL 295

  Fly   589 LKESVAKMIKIEELYREAARAMEAQKTVEAIELFKESLDMFF------QVAALPH--KDTIV-AQ 644
            ..|:...|    .:..|..:.:..:.||:|.:.:.::|...|      ::.|||.  |:.:. |:
 Worm   296 TSETEEPM----NIACEKCKTIVEEDTVKAAQEYMKTLPASFDPKCPAEIEALPGKLKELLAKAE 356

  Fly   645 QSLH 648
            |.||
 Worm   357 QILH 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-2NP_648574.1 BepA 87..205 CDD:443813
SET_SMYD4 249..541 CDD:380934 61/273 (22%)
zf-MYND 299..338 CDD:460312 11/41 (27%)
set-18NP_871849.1 zf-MYND 49..90 CDD:460312 11/41 (27%)
SET 82..274 CDD:394802 49/222 (22%)
Blue background indicates that the domain is not in the aligned region.

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