DRSC/TRiP Functional Genomics Resources

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Protein Alignment Smyd4-2 and Smyd1

DIOPT Version :10

Sequence 1:NP_648574.1 Gene:Smyd4-2 / 39414 FlyBaseID:FBgn0036282 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001153599.1 Gene:Smyd1 / 12180 MGIID:104790 Length:490 Species:Mus musculus


Alignment Length:411 Identity:86/411 - (20%)
Similarity:151/411 - (36%) Gaps:86/411 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 VGASKVVRLVETKDKGRFVVANEGLRTGDVLLFEEPVAACLEPSYFGTHCHHCFKRLHTPVSCLH 314
            :|:.:.|.:..::.|||.:.|.:.....||:..|...:|.:..|.....||.||||......|..
Mouse     3 IGSMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQ 67

  Fly   315 CSGIAFCSAQCMGEACSSYHRFEC---EYMDLMIGSGMSILCFIALRIFTQAPSLEQG-LATANL 375
            |....:|...|..:|..: |:.||   :....:....:.:...|..|:..:...|.:| |.:.:.
Mouse    68 CKFAHYCDRTCQKDAWLN-HKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDD 131

  Fly   376 LFEHLCSHEEDRQPDDYLRRALMSGFLLRILQKSLYFGRRKTEGVNPTAVELQVATALLGLLQVL 440
            |..|:....|:.|.:   .|..:..||.....:|..|             .:|..:.:.|   |:
Mouse   132 LQNHVEHFGEEEQKE---LRVDVDTFLQYWPPQSQQF-------------SMQYISHIFG---VI 177

  Fly   441 QYNAHQIYQTQVTEEHRFDGSKTVYLAAGLYGTGSYFNHECWPSTACHF-------------VGK 492
            ..|...:...:        |.:.|  ..|::......||:|||:....|             ...
Mouse   178 NCNGFTLSDQR--------GLQAV--GVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQM 232

  Fly   493 KLVLTATRPHRANELVAVNYGPIFIKNNLKERQRSLRGRYSFSCSCMACQENWP----LLQKLDK 553
            ::.|.|.......|.:.|:|  |...:..:||:|.|:.:|.|.|||..||:...    |..|.|.
Mouse   233 RIELRALGKISEGEELTVSY--IDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFLAAKEDP 295

  Fly   554 QVRFWCTSANCSNLLKFPKDLAKDVRCPR-----------CRKNISLKESV-------------- 593
            :.    :......:::|.||..:.:...|           ||:.:..:|.|              
Mouse   296 KP----SQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSI 356

  Fly   594 -AKMIKIEELYREA---ARAM 610
             ::::...:.|.||   ||.|
Mouse   357 ASEVLSYLQAYEEASHYARRM 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smyd4-2NP_648574.1 BepA 87..205 CDD:443813
SET_SMYD4 249..541 CDD:380934 67/307 (22%)
zf-MYND 299..338 CDD:460312 12/38 (32%)
Smyd1NP_001153599.1 SET_SMYD1 7..281 CDD:380924 67/305 (22%)
zf-MYND 52..90 CDD:460312 12/38 (32%)
Blue background indicates that the domain is not in the aligned region.

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