DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG32104 and Rpap1

DIOPT Version :9

Sequence 1:NP_648573.2 Gene:CG32104 / 39413 FlyBaseID:FBgn0052104 Length:1215 Species:Drosophila melanogaster
Sequence 2:NP_001157173.1 Gene:Rpap1 / 68925 MGIID:1916175 Length:1409 Species:Mus musculus


Alignment Length:1448 Identity:369/1448 - (25%)
Similarity:548/1448 - (37%) Gaps:364/1448 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFKKLKPGESEEDVLRMAAEFNAERAKDPNFQPAAAFVRMDKAPKKSMFAQ-RREQAKLGRV--- 61
            |..:.||||||.|:||..::| .|....|..|......|...||...:..| .|:...|..:   
Mouse     2 MLSRPKPGESEVDLLRFQSQF-LEAGAAPAVQLVKGSRRHGDAPPDRLPPQDHRDVVMLDNLPDL 65

  Fly    62 -TSTTEKNEEQIQPVPKEIIPQIPTSVPKER----GSHVSQVLLDEIQENILGDVKGSKMDPSSL 121
             .:......::.:|.|...:|.  ...|:||    ..|::.| |.:|.|.....|..:...||.:
Mouse    66 PPALLPAPAKRARPSPGHPLPH--DEDPEERLNRHDQHITAV-LSKIVERDTSSVTVTLPVPSGV 127

  Fly   122 GNVLGELVERTEGTRRSAFP---------ETKNVDSSKPLSIFAKQLLGAKSSTKEKSNKVSDFP 177
                             |||         :.|...|.| .||||:::...:.|....::.....|
Mouse   128 -----------------AFPPVFHRSQERQVKPAASGK-RSIFAQEIAARRVSGNRVTSAEQVVP 174

  Fly   178 RNDT--------SSIIKD------------------------AKLGKE----LHQENLNVLKQMN 206
            ..||        :...:|                        :|:.::    :|:||:..|:.|:
Mouse   175 SLDTPEGAVPCETPSFRDRSNQLPGRSHGFHRPNLVTGKGLRSKVAEQEVQTIHEENVARLQAMD 239

  Fly   207 EQDILTEKERLLASLDPSLIALLSKKRQT-----TPNSKPPNPNSPKVIEAPPMPAQSTRAQDPQ 266
            .::||.|:::|||.|||||:|.|....|.     |..:|..:|..|.|:.....|..|||.::|:
Mouse   240 PEEILKEQQQLLAQLDPSLVAFLRSHSQVQEQTGTKATKKQSPKRPSVLVTKEEPVTSTRTREPR 304

  Fly   267 I-----------------SSLTDGNPAIELLQESDKGNWLNFNLVEEHKLAWMRDIPAKISELKP 314
            .                 ..|....||::|.....| :||:.:.||..||.|.:|:| .:...:.
Mouse   305 TGDKLEEKPEATVEDKMEDKLQPRTPALKLPMTPSK-DWLHMDTVELDKLHWTQDLP-PLRRQQT 367

  Fly   315 GEQFNARFDWKGVLLPHTLKDQDASKQIDERELYLHGEEADRPGYALQELFRLARSTVLQQRLSA 379
            .|:..|||..:|.||   ..|.|....:.   |:.|||||:|.||:|||||.|.||.|.|||..|
Mouse   368 QERMQARFSLQGELL---APDVDLPTHLG---LHHHGEEAERAGYSLQELFHLTRSQVSQQRALA 426

  Fly   380 FGAIAGIFSIYNQG-FYDQ----VLSLPISKIF-FLLRFGLDDNAPAQLEVVSRALSNLFYNETD 438
            ...::.|......| |.|:    ||.|.:...| |||||.|||...:.:....|||..|.....|
Mouse   427 LQVLSQIVGRAQAGEFGDRLVGSVLRLLLDAGFLFLLRFSLDDRVDSVIAAAVRALRTLLVAPGD 491

  Fly   439 EVLLDHVHDNAYCHWQPTLEVLGNGSDGNGEDTDTNSIAFLQRYMKLLTTSKSVRAEVDEDESES 503
            |.|||...  ::.|......::.:..|...||.|..           |.|.|..|...:|.   |
Mouse   492 EELLDRTF--SWYHGASVFPLMPSQDDKEDEDEDEE-----------LETEKVKRKTPEEG---S 540

  Fly   504 RTSMDDFQLAETDLMDCLLRTNILQRIRFILVSVKPDNSTVESCLKLLIRIARTSTKVARQLANE 568
            |...|   ||..|::..||.||:|.|:|::|....|..|.:...|.:|||:||.|.:.|.::...
Mouse   541 RPPPD---LARHDVIKGLLATNLLPRLRYVLEVTCPGPSVILDILAVLIRLARHSLESAMRVLEC 602

  Fly   569 SHLIDTLFKHFLPSS------SGSNQFYGQPQVLFLKLIRVLICHHLDIAKGISKGVLI-TRLQQ 626
            ..|::|:.:.|||:|      ..:...|..|....:||:|||.....:||..:..|..: :||.:
Mouse   603 PRLMETIVQEFLPTSWSPIGVGPTPSLYKVPCASAMKLLRVLASAGRNIAARLLSGFDVRSRLCR 667

  Fly   627 Y-------LFLQDNKVQMVRIQIEALRILRCLLLLGIVDRDIFRQFLPALRQLLDWHGNHCAFDG 684
            :       |.|...:.::  :..||.|:.......| ...|::|:..|.|.:.|.......:...
Mouse   668 FIAEAPHDLALPPEEAEI--LTTEAFRLWAVAASYG-QGGDLYRELYPVLLRALQTLPTELSAHP 729

  Fly   685 VGGSGLVRQHAAALLVALV-------------ASGESGAC-----------DVEGQKLLVE---- 721
            :  ..|..|..|||...|.             |||.:.:|           .|.|.|.|||    
Mouse   730 L--QPLAMQRVAALFTLLTQLTLAASSIPPEPASGPAESCVPAIPSSVTWTQVSGLKPLVEPCLK 792

  Fly   722 ----------------PLNNCCC----GWMHAASR------------VAKIKDFSQMTLLS---- 750
                            |:.:.|.    .:..|.||            :.::.|.|.:.|||    
Mouse   793 QTLKFLPRPDVWNALGPVPSACLLFLGAYYQAWSRQSHLCPEDWLQDMERLLDESLLPLLSQPPL 857

  Fly   751 -----------------------------AALYAVGWFSRNSLLGTTSFLPFLR---SILPKFVQ 783
                                         .:|...|.....|:.|:.|..|||.   |::...||
Mouse   858 GSLWDSLRDCSPLCNPLSCASNPEALPSLVSLGCAGGCPPLSVAGSASPFPFLTALLSLINTLVQ 922

  Fly   784 S------------------SGFIACVHDLVKGSIMLRRPIDRRHVHAPLPNVGAVLMHDYGPQLV 830
            |                  :.|:.||                    ||.|          .|||.
Mouse   923 SHKGLCGQLSAVLTAPGLQNYFLQCV--------------------APAP----------APQLT 957

  Fly   831 VSETYPVHLLSNLWALLAISLDSGEKPLFEALIQPAVLEPLAEYLRQLSTQLNRVLATNFFARSE 895
            ....:.:|   :.:.|..:.|....|   .|.:||   ||.|      ||.|:..:|        
Mouse   958 PFSAWALH---HEYHLQYLVLSFAHK---AATLQP---EPAA------STALHHAVA-------- 999

  Fly   896 LRFIHQLLTTDGIEIYLKRQQMLQLVYNYLCCLSTAHATQIKSIFERFIFNGDFVKLDESS---- 956
            |..:.:||  .|.| ||.::.:|..|:.......:|......:.|      .|.:.|..|.    
Mouse  1000 LVLLSRLL--PGSE-YLAQELLLSCVFRLEFLPESASGGPEAADF------SDGLSLGSSGDPQC 1055

  Fly   957 --LKLLQQSCLEMVYPHI----IADNSEPSLSLSYTQA-------------------PILPTDWP 996
              ..||.|:|.::  |.|    :|..|....||..:||                   |:|.||||
Mouse  1056 RRGALLVQACRDL--PSIRSCYLAHCSPARASLLSSQALYCGELLRVSSLLLPVPKEPLLATDWP 1118

  Fly   997 FFQLRVILSNYLQNVQQRPAAIHSENQVVLMTLTFVRQLER---EGLQIVSPLEKLMYLMIAFMG 1058
             ||..:.|.:...:....|.|..:.. |.:..|.:|..||.   |.|..|.|..:|..||..::.
Mouse  1119 -FQPLIHLYHRASDTPSGPPAADTVG-VAMRVLQWVLVLESWRPEVLWAVPPAARLARLMCVYLV 1181

  Fly  1059 PDSQFLAPDLHELLRDCLMDFYRENAAHEFDFDAELVDKARFEPLYYLFVEHFEAASYGDELFSS 1123
            ....|....:..|:...|....|.........|..|.....|..||..|::||||.|:||.||.:
Mouse  1182 DSELFRETPIQRLVAALLARLCRPQVLPNLKLDCPLPGLTSFPDLYASFLDHFEAVSFGDHLFGA 1246

  Fly  1124 LVLVPLAQKYDNKWRRRLWSEHVQAVRFINCDESMLMGGLFAYLEPVEEEPSLVKLYGDALAQKM 1188
            |||:||.:::....|..|:.|||..:|.:....:.|...|..|.||.|:...|::||..||....
Mouse  1247 LVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLTQLPVPLECYTEPAEDSLPLLQLYFRALVTGT 1311

  Fly  1189 VRPG--SIAYRIAQHHFN 1204
            :|..  .|.|.:|..|.|
Mouse  1312 LRARWCPILYTVAVAHVN 1329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32104NP_648573.2 RPAP1_N 193..234 CDD:285785 18/44 (41%)
RPAP1_C 319..390 CDD:285784 31/70 (44%)
Rpap1NP_001157173.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 34..95 11/62 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 189..210 1/20 (5%)
RPAP1_N 225..270 CDD:370008 19/44 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 265..322 11/56 (20%)
RPAP1_C 372..437 CDD:370007 31/70 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 511..547 12/52 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845401
Domainoid 1 1.000 173 1.000 Domainoid score I3696
eggNOG 1 0.900 - - E1_KOG1894
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 271 1.000 Inparanoid score I2995
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG52889
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005659
OrthoInspector 1 1.000 - - oto94342
orthoMCL 1 0.900 - - OOG6_104902
Panther 1 1.100 - - LDO PTHR21483
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1069
SonicParanoid 1 1.000 - - X6091
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.790

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