DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32104 and Rpap1

DIOPT Version :9

Sequence 1:NP_648573.2 Gene:CG32104 / 39413 FlyBaseID:FBgn0052104 Length:1215 Species:Drosophila melanogaster
Sequence 2:NP_001029171.1 Gene:Rpap1 / 311338 RGDID:1590891 Length:1400 Species:Rattus norvegicus


Alignment Length:1467 Identity:361/1467 - (24%)
Similarity:548/1467 - (37%) Gaps:411/1467 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MFKKLKPGESEEDVLRMAAEFNAERAKDPNFQPAAAFVRMDKAPKKSMFAQRREQAKLGRVTSTT 65
            |..:.||||||.|:||..::|     .:....||...|:         .::||..|         
  Rat     2 MLSRPKPGESEVDLLRFQSQF-----LEAGAAPAVQLVK---------GSRRRGDA--------- 43

  Fly    66 EKNEEQIQP------VPKEIIPQIPTSV---------------------PKER----GSHVSQVL 99
              :.:|:.|      |..:.:|.:|.::                     |:||    ..|::.| 
  Rat    44 --HPDQLPPQDHRDVVMLDSLPDLPPALLPAPSKRARPSPGRPLPHDEDPEERLNRHDEHITAV- 105

  Fly   100 LDEIQENILGDVKGSKMDPSSLGNVLGELVERTEGTRRSAFP---------ETKNVDSSKPLSIF 155
            |.:|.|.....|..:...||.:                 |||         :.|...||| .|||
  Rat   106 LSKIVERDTSSVTVTLPVPSGV-----------------AFPPVFHRSQERQVKPAASSK-RSIF 152

  Fly   156 AKQLLGAKSS------------------------TKEKSNKVSDFPRNDTSSIIKDAKLGKEL-- 194
            |:::...:.|                        |....::.|..|....|....:...||.|  
  Rat   153 AQEIAARRVSDNRAPSAEQVVPSPDAPEGAVPCETPSSKDRGSQLPGRSHSFHRPNLITGKGLRS 217

  Fly   195 ----------HQENLNVLKQMNEQDILTEKERLLASLDPSLIALL-----SKKRQTTPNSKPPNP 244
                      |:||:..|:.|:.::||.|:::|||.|||||:|.|     ::::..|..:|..||
  Rat   218 QAAVQEVQTIHEENVARLQAMDPEEILKEQQQLLAQLDPSLVAFLRAHNHTREQTETKATKEQNP 282

  Fly   245 NSPKVIEAPPMPAQST---------RAQDPQISSLTDGNPAIELLQESDKGNWLNFNLVEEHKLA 300
            ..|.|..:...|..||         :.:|.....|....||::|....:| .||:.:.||..||.
  Rat   283 ERPSVPVSKEEPIMSTCTGESGTRDKLEDKLEDKLQPRTPALKLPMTPNK-EWLHMDTVELEKLH 346

  Fly   301 WMRDIPAKISELKPGEQFNARFDWKGVLLPHTLKDQDASKQIDERELYLHGEEADRPGYALQELF 365
            |.:|:| .:...:..|:..|||..:|.||.   .|.|....:.   |:.|||||:|.||:|||||
  Rat   347 WTQDLP-PLRRQQTQERMQARFSLQGELLE---PDVDLPTHLG---LHHHGEEAERAGYSLQELF 404

  Fly   366 RLARSTVLQQRLSAFGAIAGIFSIYNQG-FYDQ----VLSLPISKIF-FLLRFGLDDNAPAQLEV 424
            .|.||.|.|||..|...::.|......| |.|:    ||.|.:...| |||||.|||...:.:..
  Rat   405 HLTRSQVSQQRALALHVLSHIVGRAQAGEFGDRLVGSVLRLLLDAGFLFLLRFSLDDRIDSVIAA 469

  Fly   425 VSRALSNLFYNETDEVLLDHVHDNAYCHWQPTLEVLGNGSDGNGEDTDTNSIAFLQRYMKLLTTS 489
            ..|||..|.....||.|||...  ::.|......::.:..|...||.|..           ||..
  Rat   470 AVRALRALLVAPGDEELLDSTF--SWYHGASVFPMMPSHDDKEDEDEDEE-----------LTKE 521

  Fly   490 KSVRAEVDEDESESRTSMDDFQLAETDLMDCLLRTNILQRIRFILVSVKPDNSTVESCLKLLIRI 554
            |..|...:|.   ||...|   ||..|::..||.||:|.|.|::|....|..|.|...|.:|||:
  Rat   522 KVNRKTPEEG---SRPPPD---LARHDVIKGLLATNLLPRFRYVLEVTCPGPSVVLDILAVLIRL 580

  Fly   555 ARTSTKVARQLANESHLIDTLFKHFLPSS------SGSNQFYGQPQVLFLKLIRVLICHHLDI-A 612
            ||.|.:.|.::.....|::|:.:.|||:|      ..:...|..|....:||:|||.....:| |
  Rat   581 ARHSLESAMRVLECPRLMETIVREFLPTSWSPIGVGPAPSLYKVPCAAAMKLLRVLASAGRNIAA 645

  Fly   613 KGISKGVLITRLQQY-------LFLQDNKVQMVRIQIEALRILRCLLLLGIVDRDIFRQFLPALR 670
            :.:|...:.:||.::       |.|...:.::  :..||.|:.......| ...|::|:..|.|.
  Rat   646 RLLSSFDVRSRLCRFIAEAPRDLALPFEEAEI--LTTEAFRLWAVAASYG-QGGDLYRELYPVLM 707

  Fly   671 QLLDWHGNHCAFDGVGGSGLVRQHAAALLVAL------------VASGESGAC-----------D 712
            :.|.......:...:  ..|..|..|:||..|            ..||...:|           .
  Rat   708 RALQTLPPELSTHPL--QPLSMQRMASLLTLLTQLTLAASTQPEATSGSVESCVVAIPSSITWTH 770

  Fly   713 VEGQKLLVE--------------------PLNNCC-----------------C--GWMHAASRVA 738
            |.|.|.|||                    |:.:.|                 |  .|:....|..
  Rat   771 VSGLKPLVEPCLKQTLKFLRRPDVWNALGPVPSACLLFLGAYYQTWSQQSGLCPEDWLQDMERFL 835

  Fly   739 ------------------KIKDFSQM-TLLSAA-----------LYAVGWFSRNSLLGTTSFLPF 773
                              .::|.|.: ..||.|           |...|.....|:.|:.|..||
  Rat   836 DEFLLPLLSQPPLGRMWDSLRDCSPLCNPLSCASTPEALPSLVSLGCAGGCPPLSVAGSASPFPF 900

  Fly   774 LRSILPKFVQSSGFIACVHDLVKG-----SIMLRRPIDRRH-----VHAPLPNV----GAVLMHD 824
            |.::|       ..|..:..:.||     :::|..|..:.:     ..||.|.:    ...|.|:
  Rat   901 LTALL-------SLINTLGQIHKGLCRQLAVVLTAPGLQNYFLQCVAPAPAPQLTPFSAWALRHE 958

  Fly   825 YGPQLVVSETYPVHLLSNLWALLAISLDSGEKPLFEALIQPAVLEPLAEYLRQLSTQLNRVLATN 889
            |..|.:|                   |...:|   .|..||   ||.|      ||.|:.|:|..
  Rat   959 YHLQYLV-------------------LSLAQK---AATSQP---EPAA------STALHHVMALV 992

  Fly   890 FFAR----SELRFIHQLLT----------------------TDGIEI------YLKR-------- 914
            ..:|    ||. ..|:||.                      :||:.:      :.:|        
  Rat   993 LLSRLLPGSEF-LAHELLLSCVFRLGFLPENASGGPEAADFSDGLSLGNSGDPHCRRGALLVQAC 1056

  Fly   915 QQMLQLVYNYLCCLSTAHATQIKSIFERFIFNGDFVKLDESSLKLLQQSCLEMVYPHIIADNSEP 979
            |.:..:...||...|.|.|:.:.|   :.::.|:..::.                          
  Rat  1057 QDLPSIRSCYLAHCSPARASLLTS---QALYRGELPRVS-------------------------- 1092

  Fly   980 SLSLSYTQAPILPTDWPFFQLRVILSNYLQNVQQRPAAIHSENQV--VLMTLTFVRQLER---EG 1039
            ||.|...:.|:|||||||..    |.:........|:.:.:.:.|  .:..|.:|..||.   |.
  Rat  1093 SLLLPVPKEPLLPTDWPFQP----LIHLYHRASDTPSGLPAADTVGITMRVLQWVLVLESWRPEA 1153

  Fly  1040 LQIVSPLEKLMYLMIAFMGPDSQFLAPDLHELLRDCLMDFYRENAAHEFDFDAELVDKARFEPLY 1104
            |..|.|..:|..||..::.....|....:..|:...|....:.........|..|.....|..||
  Rat  1154 LWAVPPAARLARLMCVYLVDSELFRETPIQRLVAALLARLCQPQVLPNLKLDCPLPGLTSFPDLY 1218

  Fly  1105 YLFVEHFEAASYGDELFSSLVLVPLAQKYDNKWRRRLWSEHVQAVRFINCDESMLMGGLFAYLEP 1169
            ..|::||||.|:||.||.:|||:||.:::....|..|:.|||..:|.:....:.|...|..|.||
  Rat  1219 ASFLDHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHVGVLRALGLPLAQLPVPLECYTEP 1283

  Fly  1170 VEEEPSLVKLYGDALAQKMV--RPGSIAYRIAQHHFN 1204
            .|:..:|::||..||....:  |...:.|.:|..|.|
  Rat  1284 AEDSLALLQLYFRALVTGALHARWCPVLYTVAVAHVN 1320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32104NP_648573.2 RPAP1_N 193..234 CDD:285785 19/57 (33%)
RPAP1_C 319..390 CDD:285784 31/70 (44%)
Rpap1NP_001029171.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..54 5/38 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 60..95 4/34 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 161..215 7/53 (13%)
RPAP1_N 226..270 CDD:285785 18/43 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 269..310 9/40 (23%)
RPAP1_C 364..429 CDD:285784 31/70 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 504..539 12/51 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348811
Domainoid 1 1.000 169 1.000 Domainoid score I3700
eggNOG 1 0.900 - - E1_KOG1894
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 267 1.000 Inparanoid score I2965
OMA 1 1.010 - - QHG52889
OrthoDB 1 1.010 - - D25908at2759
OrthoFinder 1 1.000 - - FOG0005659
OrthoInspector 1 1.000 - - oto97862
orthoMCL 1 0.900 - - OOG6_104902
Panther 1 1.100 - - LDO PTHR21483
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X6091
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

Return to query results.
Submit another query.