DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ncc69 and kcc-3

DIOPT Version :9

Sequence 1:NP_001261758.1 Gene:Ncc69 / 39410 FlyBaseID:FBgn0036279 Length:1207 Species:Drosophila melanogaster
Sequence 2:NP_001338828.1 Gene:kcc-3 / 174212 WormBaseID:WBGene00019289 Length:1081 Species:Caenorhabditis elegans


Alignment Length:1189 Identity:285/1189 - (23%)
Similarity:465/1189 - (39%) Gaps:404/1189 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 GWIKGVLVRCLLNIWGVMLFLRLSWVVGQAGVIEGFVLILTTTAVTTITALSMSAISTNGVIKGG 277
            |.:.||.:..:.:|.||.:|:||.||||.:||.....|:......|.:|::|:||::||||::.|
 Worm   103 GVMLGVYLPTIQHILGVTMFIRLFWVVGMSGVAWTMALLAICCLSTLLTSISLSAVATNGVVESG 167

  Fly   278 GTYYMISRSLGPEFGGSIGLIFSLANAVACAMYVVGFCESMLAMMTTFGW-EIIDGGV------- 334
            |.|::|||:||.|||.::|::|.|||.||.:||:||..|.:|..:    | |:..||.       
 Worm   168 GAYFIISRNLGAEFGSAVGILFYLANTVAASMYIVGGVEVILMYL----WPEMAIGGADALHDTE 228

  Fly   335 ------QDVRIIGCITILLLLIIVVVGMEW-EAKAQIGLLIILLV-------------------- 372
                  .::|:.|.:.:|:..:||.:|::: :..|.:.|:.::|.                    
 Worm   229 MFGSLYNNLRLYGTVFLLIQALIVAMGVKFVQLLAPVSLMCVILAIAACIGGGIEKQITMEGMKV 293

  Fly   373 -AIGDFVIGS------------------------------------------------------F 382
             ||.:.::.|                                                      :
 Worm   294 CAIDNHLLQSSIVTHPIHKNQTSWFNETVDFCNLCDKSLYLESVFCANVNNDEASAEDDVFCTHY 358

  Fly   383 IGPKSDAEMAKGFLGYNATLFKNNLFADYRPEKGGI----------------QHDFFSVFAIFFP 431
            ...|...::|  |.|:|.....:|::.:|. ||..:                ...||.:.||:||
 Worm   359 TSKKMTCQLA--FPGFNMKTLNDNMWPEYM-EKSEVVPGVRGKETAEVVQDESSTFFMLMAIYFP 420

  Fly   432 AATGILAGANISGDLKDPQKSIPKGTILAIVITTGTYLIMVLQCGATVARDATGNLSDVVNGTFA 496
            |.|||..|.|:||||:|||:|||.|||.|.:.|:..|.|:.:..|.::.|       .|:...| 
 Worm   421 AVTGIFTGTNMSGDLRDPQRSIPVGTIAATLTTSAIYYILAILFGGSITR-------SVLRDKF- 477

  Fly   497 FLDCQPGECNYGLQNSFQVIELVSAFGPLIYAGCYAATLSSALASLVSAPKVFQALCKDELYPKI 561
                     ...:.|:..|..|......::..|.:.:|..:||..|.|||::.|::.||::.|.:
 Worm   478 ---------GRSIGNTMVVAALSWPHPAVVTVGAFLSTFGAALQCLCSAPRLLQSIAKDDVIPIL 533

  Fly   562 VWFAKGYGKNNEPVRGYVLTFIIACAFILIGELNLIAPLISNFFLAAYMLINFSTFHASLAKPVG 626
            ..||: ..|||||..|.|||.|||...||:|.::.||.::..|||..|..:|......|:.|...
 Worm   534 APFAR-VTKNNEPFLGLVLTVIIAECGILLGAVDKIAEVLDFFFLMCYAFVNLIAVLHSVLKSPN 597

  Fly   627 WRPTFKYYNMWLSLLGAILCVAVMFLISWATALITFAAVLALYLIVAYRKPDVNWGSTTQAQTYK 691
            |||.|||::..||||||.||..:||..|...|.|...|...:|..|.::.....||...:.....
 Worm   598 WRPRFKYFHWTLSLLGAALCFFIMFASSVPLACIACTATAVIYKYVEWKGAKKEWGDGMRGLALT 662

  Fly   692 NALMSVQQLNNVEEHVKNYRPQILVL------SGLPNTRPV-LVDLAYMLTKNLSLLVCGHVLKG 749
            .|..|:.::.:.:.|.||:|||:|:|      ..:.:.|.| :::|...|.....|.:....|||
 Worm   663 TAQYSLLKVEDKDPHPKNWRPQVLILLTSQWSKEMIDRRAVSMLNLGAQLKAGRGLAIACAFLKG 727

  Fly   750 S-SSQKYR--------TYLQERAGNWFRKHRVKGFYALVDGEDFE-SGT-RALMQATGIGKLKPN 803
            | .|||.:        |.:::.:     ..|::||...:...:.: :|| ..|.|:.|||.|:||
 Worm   728 SVDSQKDKNRARDVKTTLVKDMS-----SVRLRGFAKTMFYNNHQINGTISGLYQSIGIGGLRPN 787

  Fly   804 IILMGYKTDWQTCDHKELDQYFNVMHKALDMYLSVAILRVPQGLDCSQVLGSQDGWKTVSDVPRT 868
            .||:    :|                                                       
 Worm   788 TILL----NW------------------------------------------------------- 793

  Fly   869 LQPNESSGDLQAVDSSVRNGLSGSIDSLSRNVSQEDRNRNQLVHSEQNSLKIVKLRFKQGLRRMR 933
              |||.:.|...:.:                        .:::|                     
 Worm   794 --PNEKNPDELVLFA------------------------EEIIH--------------------- 811

  Fly   934 SWPGAASSTSDLSFIAGNQSKDVSGMPDPLDAKSANLVSNSLRKSKLKHDDPASLYKGPGGAELP 998
               |||                                          :|:...:.||       
 Worm   812 ---GAA------------------------------------------NDNCLIVTKG------- 824

  Fly   999 KEVLADLTQFTRKRSHAVIDVWWLYDDGGLTLLLPYIISTRRTWQSCKLRVYALANKNSELEFEQ 1063
               :.|..::: :|....||:||:..|||:.:|:.|::...:.|:.|.||::|::.::|.   :.
 Worm   825 ---ITDFPEYS-ERLTGFIDIWWIVQDGGILMLIAYLLRQHKVWKGCTLRIFAVSEQDST---KS 882

  Fly  1064 RSMASLLSK-----------FRIDYSDLTLIPDITKK---------------------------- 1089
            ..|.:.|.|           |.:|..|:.:..::.:|                            
 Worm   883 EDMKAGLQKYIYMLRIDAELFIVDLLDMEVSDEVVEKAAEVERKQKEREEMRRSKSGYLNDGFME 947

  Fly  1090 --------------------PQ----------ETSTQFFNELIKDFVVTEKDGENGTSSRATLNE 1124
                                ||          ||.|.|...|..||.      .:||.     ||
 Worm   948 DNGKPRQVMMRHSDSARSFSPQPGAHTSINLDETETSFTESLFDDFY------RSGTP-----NE 1001

  Fly  1125 DDALITDDDLLAVQDKTNRYLRLREYLREQSTKSDLVVMTLPMPRKN-IVSAPLYMAWLESLSRD 1188
            |    .:..:.....|.|..:||...:||.|..|.|:::.||.|.:| :.....||.:|:.|:.|
 Worm  1002 D----LEGAMKLNIHKMNTSVRLNRVIRENSPDSQLILLNLPSPPRNRLAFNNSYMTYLDVLTED 1062

  Fly  1189 MPPFLFVRGNQTSVLTFYS 1207
            :|..||:.|:...|:|..|
 Worm  1063 LPRVLFIGGSGREVITIDS 1081

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ncc69NP_001261758.1 AA_permease_N 144..>183 CDD:285588
2a30 155..1207 CDD:273347 284/1187 (24%)
ArsB_NhaD_permease <524..>682 CDD:304373 60/157 (38%)
SLC12 724..1207 CDD:281515 102/564 (18%)
kcc-3NP_001338828.1 SLC12 61..1081 CDD:332077 284/1187 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57166
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.