DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10418 and SMD3

DIOPT Version :9

Sequence 1:NP_648570.1 Gene:CG10418 / 39408 FlyBaseID:FBgn0036277 Length:95 Species:Drosophila melanogaster
Sequence 2:NP_013248.1 Gene:SMD3 / 850839 SGDID:S000004137 Length:101 Species:Saccharomyces cerevisiae


Alignment Length:75 Identity:21/75 - (28%)
Similarity:38/75 - (50%) Gaps:10/75 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 GKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPD-KYPHMLSVKNCFIRGSVVRYVQLPGD 75
            |..|.:||....:..|.|...:..:|::|.|:..|:|. ...||..:   |:|||.::::.:|  
Yeast    16 GHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQI---FVRGSQIKFIVVP-- 75

  Fly    76 EVDTQLLQDA 85
                .||::|
Yeast    76 ----DLLKNA 81

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10418NP_648570.1 LSm2 2..90 CDD:212472 21/75 (28%)
SMD3NP_013248.1 Sm_D3 7..76 CDD:212468 18/68 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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