DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10418 and LSM2

DIOPT Version :9

Sequence 1:NP_648570.1 Gene:CG10418 / 39408 FlyBaseID:FBgn0036277 Length:95 Species:Drosophila melanogaster
Sequence 2:NP_563682.1 Gene:LSM2 / 839526 AraportID:AT1G03330 Length:93 Species:Arabidopsis thaliana


Alignment Length:90 Identity:70/90 - (77%)
Similarity:77/90 - (85%) Gaps:0/90 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGS 65
            |||:|:||.|||:||.|||||||:|.||||||||||||||.:..|.|.|||||||||:|||||||
plant     1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGS 65

  Fly    66 VVRYVQLPGDEVDTQLLQDAARKEA 90
            ||||||||.|.||..||.||||:||
plant    66 VVRYVQLPKDGVDVDLLHDAARREA 90

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10418NP_648570.1 LSm2 2..90 CDD:212472 67/87 (77%)
LSM2NP_563682.1 LSm2 2..90 CDD:212472 67/87 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 109 1.000 Domainoid score I2138
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H48535
Inparanoid 1 1.050 142 1.000 Inparanoid score I1779
OMA 1 1.010 - - QHG54490
OrthoDB 1 1.010 - - D1571169at2759
OrthoFinder 1 1.000 - - FOG0005237
OrthoInspector 1 1.000 - - oto3395
orthoMCL 1 0.900 - - OOG6_103409
Panther 1 1.100 - - LDO PTHR13829
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4249
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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