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Protein Alignment CG10418 and lsm4
DIOPT Version :9
Sequence 1: | NP_648570.1 |
Gene: | CG10418 / 39408 |
FlyBaseID: | FBgn0036277 |
Length: | 95 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_989371.1 |
Gene: | lsm4 / 395002 |
XenbaseID: | XB-GENE-945533 |
Length: | 138 |
Species: | Xenopus tropicalis |
Alignment Length: | 95 |
Identity: | 33/95 - (34%) |
Similarity: | 51/95 - (53%) |
Gaps: | 12/95 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFIR 63
||..|..|:.....::|||||..:..|.|.|.|.::||.|.::..| |.||:..| ..|:||
Frog 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---PECYIR 62
Fly 64 GSVVRYVQLPGDEVDTQLLQDAARKEAVVS 93
||.::|:::|.:.:|.. ||.|:|
Frog 63 GSTIKYLRIPDEIIDMV-------KEEVMS 85
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
CG10418 | NP_648570.1 |
LSm2 |
2..90 |
CDD:212472 |
29/89 (33%) |
lsm4 | NP_989371.1 |
LSm4 |
2..77 |
CDD:212470 |
27/77 (35%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1571169at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.920 |
|
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