DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10418 and snrpd3l

DIOPT Version :9

Sequence 1:NP_648570.1 Gene:CG10418 / 39408 FlyBaseID:FBgn0036277 Length:95 Species:Drosophila melanogaster
Sequence 2:NP_956054.1 Gene:snrpd3l / 327011 ZFINID:ZDB-GENE-030131-5219 Length:128 Species:Danio rerio


Alignment Length:84 Identity:19/84 - (22%)
Similarity:40/84 - (47%) Gaps:11/84 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 EVVVELKNDLSIC---------GTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNCFIRGSVVRY 69
            :|:.|.:..:..|         |.|...:..:|.::::|:||..|  ..:..::..:||||.:|:
Zfish     8 KVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD--GRVSQLEQVYIRGSKIRF 70

  Fly    70 VQLPGDEVDTQLLQDAARK 88
            :.||....:..:|:....|
Zfish    71 LILPDMLKNAPMLKSMKNK 89

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10418NP_648570.1 LSm2 2..90 CDD:212472 19/84 (23%)
snrpd3lNP_956054.1 Sm_D3 6..75 CDD:212468 16/68 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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