DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10418 and Snrpd2l

DIOPT Version :9

Sequence 1:NP_648570.1 Gene:CG10418 / 39408 FlyBaseID:FBgn0036277 Length:95 Species:Drosophila melanogaster
Sequence 2:XP_214847.2 Gene:Snrpd2l / 292688 RGDID:1305065 Length:118 Species:Rattus norvegicus


Alignment Length:71 Identity:12/71 - (16%)
Similarity:30/71 - (42%) Gaps:22/71 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 EVVVELKNDLSICGTLHSVDQYLNIKLTDI-----------------SVTDPDKYPHMLSVKNCF 61
            :|::..:|:..:.|.:.:.|::.|:.|.::                 ...:.|:|     :...|
  Rat    41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEIWTEVPKSGKGKKKSKPVNKDRY-----ISKMF 100

  Fly    62 IRGSVV 67
            :||:.|
  Rat   101 LRGNSV 106

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10418NP_648570.1 LSm2 2..90 CDD:212472 12/71 (17%)
Snrpd2lXP_214847.2 Sm_D2 24..113 CDD:212467 12/71 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1958
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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