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Protein Alignment CG10418 and Lsm4
DIOPT Version :9
Sequence 1: | NP_648570.1 |
Gene: | CG10418 / 39408 |
FlyBaseID: | FBgn0036277 |
Length: | 95 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001099543.1 |
Gene: | Lsm4 / 290647 |
RGDID: | 1306808 |
Length: | 138 |
Species: | Rattus norvegicus |
Alignment Length: | 89 |
Identity: | 32/89 - (35%) |
Similarity: | 52/89 - (58%) |
Gaps: | 6/89 - (6%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVT--DPDKYPHMLSVKNCFIR 63
||..|..|:.....::|||||..:..|.|.|.|.::||.|.::..| |.||:..| ..|:||
Rat 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRM---PECYIR 62
Fly 64 GSVVRYVQLPGDEVDTQLLQDAAR 87
||.::|:::| ||:...:.::||:
Rat 63 GSTIKYLRIP-DEIIDMVREEAAK 85
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
CG10418 | NP_648570.1 |
LSm2 |
2..90 |
CDD:212472 |
31/88 (35%) |
Lsm4 | NP_001099543.1 |
LSm4 |
2..77 |
CDD:212470 |
29/78 (37%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1571169at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 1.920 |
|
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