DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lmx1a and DAR4

DIOPT Version :9

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_197291.2 Gene:DAR4 / 831657 AraportID:AT5G17890 Length:1613 Species:Arabidopsis thaliana


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757
LIM 333..388 CDD:295319
Homeobox 427..480 CDD:278475
DAR4NP_197291.2 PLN03210 26..>844 CDD:215633
TIR 30..163 CDD:279864
AAA 166..294 CDD:99707
leucine-rich repeat 544..572 CDD:275380
leucine-rich repeat 573..594 CDD:275380
LRR_3 594..613 CDD:285026
leucine-rich repeat 595..617 CDD:275380
leucine-rich repeat 618..640 CDD:275380
leucine-rich repeat 641..663 CDD:275380
leucine-rich repeat 685..708 CDD:275380
leucine-rich repeat 750..772 CDD:275380
leucine-rich repeat 773..793 CDD:275380
leucine-rich repeat 794..824 CDD:275380
LIM_DA1 1240..1291 CDD:188782
DUF3633 1387..1602 CDD:289113
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 47 0.796 Domainoid score I4515
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.