DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lmx1a and ZFHX4

DIOPT Version :9

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_078997.4 Gene:ZFHX4 / 79776 HGNCID:30939 Length:3616 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757
LIM 333..388 CDD:295319
Homeobox 427..480 CDD:278475
ZFHX4NP_078997.4 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..54
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 425..480
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 522..545
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 565..611
C2H2 Zn finger 615..636 CDD:275368
C2H2 Zn finger 646..667 CDD:275368
C2H2 Zn finger 701..718 CDD:275368
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1299..1369
C2H2 Zn finger 1399..1419 CDD:275371
C2H2 Zn finger 1427..1444 CDD:275371
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1474..1525
C2H2 Zn finger 1543..1567 CDD:275368
C2H2 Zn finger 1595..1613 CDD:275368
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1806..1836
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1854..1903
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1993..2069
COG5576 2101..2240 CDD:227863
HOX 2130..2185 CDD:197696
Homeobox 2229..2282 CDD:278475
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2334..2356
PHA02682 2350..>2506 CDD:177464
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2373..2476
COG5576 2542..>2664 CDD:227863
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2552..2609
Homeobox 2609..2661 CDD:278475
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2809..2856
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2874..2930
Homeobox 2933..2985 CDD:278475
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3141..3221
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3330..3386
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3492..3511
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 3560..3583
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.