Protein Alignment Lmx1a and lmx1a

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_001020669.1
• Gene: lmx1a / 558036
• ZFINID: ZDB-GENE-041014-332
• Length: 366
• Species: Danio rerio
• Alignment Length: 405
• Identity: 149/405 - (36%)
• Similarity: 195/405 - (48%)
• Gaps: 103/405 - (25%)

  Fly   274 LCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCC 338
            :||||.:.|.||:|:.|.|..|||:||.|..|...|..||::||..||||.||.:||.|:|..|.
Zfish    25 VCEGCNELIRDRYLLRVQDGLWHERCLHCASCREPLKDTCFLRNKTLYCKRDYQKLFVVRCQGCS 89

  Fly   339 HAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRH--------------- 388
            ..|.|.|||||...:.||||.||.|..|...||||:..:||...|||..|
Zfish    90 EIISPSELVMRAQGSAVFHLRCFCCCVCGCRLQKGDHCVLRGDGLFCATHFHNQLASPTSSDSGK 154

  Fly   389 --DLEKEMFLAAAAAQHCGFVGLDEEDLLRPRD--------GRRGPKRPRTILTSQQRKQFKASF 443
              |:|::.               |:||.|:...        ..:.|||||||||:|||:.|||||
Zfish   155 SEDIEEDN---------------DDEDNLKTAGESNITGDVEHKRPKRPRTILTTQQRRAFKASF 204

  Fly   444 DQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGSGSGRGTGNSSAT 508
            :.|.||||||||.||.:|||||||||||||||||||||:.|:.:|
Zfish   205 EVSSKPCRKVRETLAAETGLSVRVVQVWFQNQRAKMKKLVRRQQQ-------------------- 249

  Fly   509 DDKDTNDKEDKCVKQELGGDSSGYLGGLDSTFASQPLNPNLPFSPDDYP-ANSNDSFCSSDLSLD 572
                  .|:..|.:::....|..:..   ::..:.|:......|   || ...|.|..|..|.||
Zfish   250 ------QKQTVCPQEKRESPSQQHTA---TSCGALPVELECAGS---YPLPQQNLSLDSQSLKLD 302

  Fly   573 ----GSNFDQLDDD------ADSLSLNNLELQSTSSSGNQHSHSHSNP--H--DMLANLNNSLIN 623
                |....|:..|      .|:|                :..:.|:|  |  |.:::...|.:.
Zfish   303 PFRQGLTPPQMPGDHMHPYGCDTL----------------YDETDSDPLCHFGDCMSSSELSFLT 351

  Fly   624 PIDKLYLMQNSYFSS 638
            |||:||.||:|||:|
Zfish   352 PIDRLYSMQDSYFAS 366

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	27/51 (53%)
		LIM	333..388	CDD:295319	26/54 (48%)
		Homeobox	427..480	CDD:278475	43/52 (83%)
lmx1a	NP_001020669.1	LIM1_Lmx1a	26..77	CDD:188756	26/50 (52%)
		LIM	84..140	CDD:295319	26/55 (47%)
		Homeobox	188..241	CDD:278475	43/52 (83%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	74	1.000	Domainoid score	I9077
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D323174at33208
OrthoFinder	1	1.000	-	-		FOG0001820
OrthoInspector	1	1.000	-	-		otm24731
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	LDO	PTHR24208
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R3844
SonicParanoid	1	1.000	-	-		X1182
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	10	10.010