Protein Alignment Lmx1a and lhx6b

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: XP_685757.5
• Gene: lhx6b / 557579
• ZFINID: ZDB-GENE-060531-41
• Length: 286
• Species: Danio rerio
• Alignment Length: 224
• Identity: 76/224 - (33%)
• Similarity: 116/224 - (51%)
• Gaps: 32/224 - (14%)

  Fly   274 LCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHH--TCYVRNSKLYCKMDYDRLFGVKCSS 336
            :|.||..:|.||:::.|....||.:||.|..|.:.|.|  :|::||.:::|:.||:..||:||:.
Zfish    32 ICTGCSTEIFDRYVLKVNGLTWHLRCLQCSVCAVSLGHQNSCFIRNKEIFCRTDYNSTFGIKCAR 96

  Fly   337 CCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRH------DLEKEMF 395
            |.|.:...:.:.| ..|.::||.||.|:.|:..|..||:|.|.:.|:.|..|      :|::
Zfish    97 CGHQVSANDWIRR-AGNDIYHLACFACFFCKRQLSTGEEFGLMENQVLCRVHYDITLLNLQQ--- 157

  Fly   396 LAAAAAQHCGFVGLDEEDLLRPRDGR-------RGPKRPRTILTSQQRKQFKASFDQSPKPCRKV 453
                         |.:...|...||.       :..|||||..||:|.:..:..|.:...|....
Zfish   158 -------------LSDNGNLIHLDGALPIQYLPKASKRPRTSFTSEQIQIMQTHFIRDKNPDAAT 209

  Fly   454 REALAKDTGLSVRVVQVWFQNQRAKMKKI 482
            .:.||..||||.||:||||||.||:.|:|
Zfish   210 LQRLADTTGLSRRVIQVWFQNCRARQKRI 238

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	20/53 (38%)
		LIM	333..388	CDD:295319	19/54 (35%)
		Homeobox	427..480	CDD:278475	24/52 (46%)
lhx6b	XP_685757.5	LIM	32..86	CDD:295319	19/53 (36%)
		LIM	94..148	CDD:295319	18/54 (33%)
		Homeobox	183..236	CDD:278475	24/52 (46%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.910