Protein Alignment Lmx1a and prickle1

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: XP_012814522.1
• Gene: prickle1 / 549693
• XenbaseID: XB-GENE-486941
• Length: 871
• Species: Xenopus tropicalis
• Alignment Length: 404
• Identity: 90/404 - (22%)
• Similarity: 140/404 - (34%)
• Gaps: 106/404 - (26%)

  Fly   274 LCEGCGQKIHDR----FLMNVG-DANWHEQCLACCYCGMQLHHTCY-VRNSKLYCKMDYDRLFGV 332
            :||.||:||:..    |:...| ...||..|..|..|...|....| .::.|::|...:..|...
 Frog   163 MCEKCGEKINGGEIAIFVSRAGPGVCWHPSCFVCSTCNELLVDLIYFYQDGKIHCGRHHAELLKP 227

  Fly   333 KCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFC-------YRHDL 390
            :||:|...|...|..  ......:|:..|.||.|...| .|::::::||:.||       |
 Frog   228 RCSACDEIIFADECT--EAEGRHWHMNHFSCYECETVL-GGQRYIMKDGRPFCCGCFESHY---- 285

  Fly   391 EKEMFLAAAAAQHCG-FVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSP------- 447
                   |...:.|| .:|:|...:  ..||:..    ....|.....|.|.|....|
 Frog   286 -------AEYCESCGEHIGVDHAQM--TYDGQHW----HATETCFSCAQCKVSLLGCPFLPKKGR 337

  Fly   448 ----KPCRKVREALAKDTGLSVRVVQVWFQNQRA-------KMKKIQRKAKQ------------- 488
                |.|....:..|.|:..|.      ||:.|:       :|.|..|.|.|
 Frog   338 IYCSKACSLGEDVHASDSSDSA------FQSARSRESRRSVRMGKSSRSADQCRQSLLLSPALNY 396

  Fly   489 --NGGSGGG-------------SGSGRGTGNS--SATDDKDTNDKEDKCVKQELGGDSSGYLGGL 536
              .|.||..             |..|.|..|.  .|.|:::|.:..::..:.:      .|:..|
 Frog   397 KFPGMSGNADDTLSRKMDDLSISRQGAGFDNDFWKARDEQETPEDHEEWAEHD------DYMTQL 455

  Fly   537 DSTFASQPLNPNLPFSPDDYPANSNDSFCSSDLSLDGSNFDQLDDDADSLSLNNLE-----LQST 596
            ...|..:.|   ...:|:|  ..||:.:.|.::.  |.|..|.:....||:....:     .||.
 Frog   456 LLKFGEKGL---FQQAPED--NRSNEHWMSDNIK--GKNDLQRNSRNQSLASKKYQSDMYWAQSQ 513

  Fly   597 SSSGNQHSHSHSNP 610
            ...|:....||..|
 Frog   514 DGLGDSAYGSHPGP 527

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	17/57 (30%)
		LIM	333..388	CDD:295319	17/61 (28%)
		Homeobox	427..480	CDD:278475	13/70 (19%)
prickle1	XP_012814522.1	PET_Prickle	60..156	CDD:193602
		LIM1_Prickle	164..222	CDD:188799	17/57 (30%)
		LIM2_Prickle	227..282	CDD:188802	16/57 (28%)
		LIM3_Prickle	287..345	CDD:188804	12/63 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910