Protein Alignment Lmx1a and limd1

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_001016606.1
• Gene: limd1 / 549360
• XenbaseID: XB-GENE-1017238
• Length: 593
• Species: Xenopus tropicalis
• Alignment Length: 371
• Identity: 86/371 - (23%)
• Similarity: 144/371 - (38%)
• Gaps: 70/371 - (18%)

  Fly    43 SGNSLHLSNSNNNLPTSISGNNSPTATASLTGQHQQHQQQQHQQQQQHPHQQHQQHQQQHAASTT 107
            |.|||: |.|:|::..|        |.:|....:.::...|.:|.|...:..:..|.   :|...
 Frog   263 STNSLN-SGSSNDVKLS--------ALSSYCVGYNENSSDQIKQMQAPCYTFNSGHS---SADEQ 315

  Fly   108 P--VPINSCPTPTGHSPLSSSSSNSNHNNNNNNNNGGSSSNNLHSACNTLTAAAVAAASAAAVAA 170
            |  :|. ||...:...|  :|:.:|:|.:...::   |:...:...|.||:.:
 Frog   316 PQEIPF-SCTDSSAEPP--ASTLDSDHIDIVQDS---STLMKIKLPCQTLSQS------------ 362

  Fly   171 PSPAGTSVATSQLGGAVAAAIAAAAAAAAAATTPTSTGPAATGSGNANGSGNGNGNGNGNGNGNG 235
             |..|:|.|..:| .|:...:.....|...|....:....:.|...||.:....||...||
 Frog   363 -SKQGSSRAEKKL-EAITRHLEQEMDAHTRADYFGTCVKCSKGVYGANQACQAMGNLYHNG---- 421

  Fly   236 NGNGGGAATASAAAASKLSADCSGRTEV---GHIKCEKNF---------ELCEGCGQKIHDRFLM 288
                   ....:|.:.||    .|:...   |.:.||::|         :.|..||..|.|..|.
 Frog   422 -------CFICSACSRKL----RGKAFYFVNGKVYCEEDFLYSGFHQSADRCFVCGHWIMDMILQ 475

  Fly   289 NVGDANWHEQCLACCYCGMQLHHTCYV--RNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPI 351
            .:| .::|..|..|..|...|....:.  ..:|:||..||.::...||::|...|||.|.....|
 Frog   476 ALG-KSFHPGCFRCAVCNECLDGVPFTVDMENKIYCVKDYHKILAPKCAACSLPILPSEGTDETI 539

  Fly   352 ----PNFVFHLPCFVCYACRLPLQKGEQFML--RDGQLFCYRHDLE 391
                .:..:|:.|:.|.:|.|.|...:....  .:|.|||:...|:
 Frog   540 RVVSMDKDYHIDCYRCESCALELNNEDDHRCYPLEGHLFCHNCHLK 585

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	16/53 (30%)
		LIM	333..388	CDD:295319	18/60 (30%)
		Homeobox	427..480	CDD:278475
limd1	NP_001016606.1	Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	308..336		8/33 (24%)
		LIM1_Ajuba_like	397..450	CDD:188738	14/67 (21%)
		LIM2_Ajuba_like	462..514	CDD:188741	15/52 (29%)
		LIM3_Ajuba_like	522..583	CDD:188822	17/60 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910