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Protein Alignment Lmx1a and Lmo3
DIOPT Version :9
Sequence 1: | NP_729801.1 |
Gene: | Lmx1a / 39406 |
FlyBaseID: | FBgn0052105 |
Length: | 640 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_006237647.1 |
Gene: | Lmo3 / 497798 |
RGDID: | 1561357 |
Length: | 156 |
Species: | Rattus norvegicus |
Alignment Length: | 148 |
Identity: | 55/148 - (37%) |
Similarity: | 76/148 - (51%) |
Gaps: | 22/148 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 267 KCEKNFEL-------------CEGCGQKIHDRFLMNVGDANWHEQCL--ACCYCGM-QLHHTCYV 315
|.||:|.: |.||.:||.||:|:...|..|||.|| |||.|.: ::..|.|.
Rat 3 KQEKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYT 67
Fly 316 RNSKLYCKMDYDRLFGV--KCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFML 378
:.:.:.|:.||.||||| .|::|...|...|:|||...| |:||.||.|..|......|::|.|
Rat 68 KANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDN-VYHLDCFACQLCNQRFCVGDKFFL 131
Fly 379 RDGQLFC---YRHDLEKE 393
::..:.| |...|.||
Rat 132 KNNMILCQTDYEEGLMKE 149
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 0.910 |
|
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