Protein Alignment Lmx1a and Abd-B

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_001303472.1
• Gene: Abd-B / 47763
• FlyBaseID: FBgn0000015
• Length: 493
• Species: Drosophila melanogaster
• Alignment Length: 562
• Identity: 107/562 - (19%)
• Similarity: 151/562 - (26%)
• Gaps: 246/562 - (43%)

  Fly    22 QQNHGGARFLDNPNPGSMTASSGNSLHLSNSNNNLPTSISGNNSPT--------ATASLTGQHQQ 78
            ||.|            ::.|||.:|:.......:.||:   :::||        ....|....||
  Fly    62 QQQH------------AVVASSPSSVLQQQQQQSTPTT---HSTPTHAVMYEDPPPVPLVAVQQQ 111

  Fly    79 HQQQQHQQQQQHPHQQHQQHQQQHAASTTPV--PINSCPTPTGHSPLSSSSSNSNHN-----NNN 136
            |.....||||    .|.||.|||...:||||  .::...||||.|........|.|:     ...
  Fly   112 HLPAPQQQQQ----LQQQQQQQQQQLATTPVAGALSPAQTPTGPSAQQQQHLTSPHHQQLPQQQT 172

  Fly   137 NNNNGGSSSNNLHSACNTLTAAAVAAAS---AAAVAAPSPAGTSVATSQLGGAVAAAIAAAAAAA 198
            .|:....:|:||........||.....:   |...|:.||:..|.....:..::..|.....|..
  Fly   173 PNSVASGASSNLQQQQQQQNAAVAPGQTQIVAPTTASVSPSSVSSQKEDINMSIQLAPLHIPAIR 237

  Fly   199 AAATTPTSTGPAATGSGNANGSGNGNGNGNGNGNGN----------------------GNGNGGG 241
            |.....|.|. ||.....|:.:.|..|.....|:|.                      |......
  Fly   238 AGPGFETDTS-AAVKRHTAHWAYNDEGFNQHYGSGYYDRKHMFAYPYPETQFPVGQYWGPNYRPD 301

  Fly   242 AATASAAAASKL-------------------------------------------SADCSGRTEV 263
            ..|::||||:.:                                           |:..||...|
  Fly   302 QTTSAAAAAAYMNEAERHVSAAARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSV 366

  Fly   264 GHI-KCEKNFELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYD 327
            |.: .|..|..|.|..||                                ..||..
  Fly   367 GAVGPCTPNPGLHEWTGQ--------------------------------VSVRKK--------- 390

  Fly   328 RLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEK 392
                                                   |.|..|.:..            :|||
  Fly   391 ---------------------------------------RKPYSKFQTL------------ELEK 404

  Fly   393 EMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREAL 457
            |....|                                ..|:|:                 |..|
  Fly   405 EFLFNA--------------------------------YVSKQK-----------------RWEL 420

  Fly   458 AKDTGLSVRVVQVWFQNQRAKMKK-IQRKAKQNGGSGGGSGS 498
            |::..|:.|.|::||||:|.|.|| .||:|.|...:...|.:
  Fly   421 ARNLQLTERQVKIWFQNRRMKNKKNSQRQANQQNNNNNSSSN 462

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	5/51 (10%)
		LIM	333..388	CDD:295319	3/54 (6%)
		Homeobox	427..480	CDD:278475	14/52 (27%)
Abd-B	NP_001303472.1	Homeobox	390..443	CDD:278475	22/161 (14%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	45	1.000	Domainoid score	I3555
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R3844
SonicParanoid	0	0.000	Not matched by this tool.
	2	2.030