DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and lhx6a

DIOPT Version :9

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001004015.1 Gene:lhx6a / 445565 ZFINID:ZDB-GENE-041025-1 Length:375 Species:Danio rerio


Alignment Length:388 Identity:105/388 - (27%)
Similarity:157/388 - (40%) Gaps:105/388 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 VPINSCPTPTGHS-PLSSSSSNSNHNNNNNNNNGGSSSNNLHSACNTLTAAAVAAASAAAVAAPS 172
            :|.....:|..|| |.:|...:..|....:.::|.|..:|:......              ::||
Zfish    22 IPSKQVISPDSHSTPGASRCVDGQHGQAMSQSDGESHRSNMEKDDTR--------------SSPS 72

  Fly   173 PAGTSVATSQLGGAVAAAIAAAAAAAAAATTPTSTGPAATGSGNANGSGNGNGNGNGNGNGNGNG 237
            |..|                      .:..:||||..:...:|                      
Zfish    73 PPST----------------------PSICSPTSTASSVPSTG---------------------- 93

  Fly   238 NGGGAATASAAAASKLSADCSGRTEVGHIKCEKNFELCEGCGQKIHDRFLMNVGDANWHEQCLAC 302
                                            ||  :|..||.:|.||:|:.|.:..||.:||.|
Zfish    94 --------------------------------KN--VCASCGLEILDRYLLKVNNLIWHVRCLEC 124

  Fly   303 CYC--GMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYA 365
            ..|  .::.|.:||::|.:::|||||...||.||:.|...|...:.|.|...| .:||.||.|::
Zfish   125 SVCRTSLRQHSSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGN-AYHLACFACFS 188

  Fly   366 CRLPLQKGEQFMLRDGQLFCYRH-DLEKEMFLAAAAAQHCGFVGLDEEDLL-RPRDGRRGP-KRP 427
            |:..|..||:|.|.:.::.|..| |...|....||.:..    ||..|..: ..:|.:..| ||.
Zfish   189 CKRQLSTGEEFGLVEEKVLCRIHYDTMVENLKRAAESGS----GLTLEGAVPSEQDSQPKPAKRA 249

  Fly   428 RTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNG 490
            ||..|::|.:..:|.|.|...|..:..:.||..||||.||:||||||.||:.||  ...:.||
Zfish   250 RTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK--HTPQHNG 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 22/53 (42%)
LIM 333..388 CDD:295319 19/54 (35%)
Homeobox 427..480 CDD:278475 24/52 (46%)
lhx6aNP_001004015.1 LIM1_Lhx6 97..150 CDD:188766 21/52 (40%)
LIM2_Lhx6 158..212 CDD:188768 18/54 (33%)
Homeobox 250..302 CDD:278475 24/51 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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