DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lmx1a and slou

DIOPT Version :9

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_001262808.1 Gene:slou / 42547 FlyBaseID:FBgn0002941 Length:698 Species:Drosophila melanogaster


Alignment Length:647 Identity:131/647 - (20%)
Similarity:205/647 - (31%) Gaps:283/647 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 GSLYS----LQQNHGGARFLDNPNPGSMTASSGNSLHLSNSNNNL------PTSIS--GNNSPTA 68
            |||.|    ||::   ::..:.||     .::.|||...|:|:|.      |.|:.  ..:||..
  Fly    99 GSLLSRLSPLQED---SQDKEKPN-----HNNNNSLTNHNANSNTRRSQSPPASVGSVSFSSPAQ 155

  Fly    69 TASL--------------------------------------TGQHQQHQQQQHQQQQQHPHQQH 95
            ...|                                      ..||..|.|.||.|...|||...
  Fly   156 QRKLLELNAVRHLARPEPLQHPHAALLQQHPHLLQNPQFLAAAQQHMHHHQHQHHQHPAHPHSHQ 220

  Fly    96 QQHQQQH-----------------AASTTPVPINSCPTPTGHSPLSSSSSNSNHNNNNNN----- 138
            ..|...|                 ::||.|      |:| ..||||..:|.:.|::...:     
  Fly   221 HPHPHPHPHPHPHPSAVFHLRAPSSSSTAP------PSP-ATSPLSPPTSPAMHSDQQMSPPIAP 278

  Fly   139 ------------------------------------NNGGSSSNNLHSACNTLTAAAVAAASAAA 167
                                                ....||::.|.||.|:::.|:::.:::  
  Fly   279 PQNPPHSSQPPQQQQVAAPSDMDLERIKLVAAVAARTTQASSTSALASASNSVSNASISISNS-- 341

  Fly   168 VAAPSPAGTSVA----TSQLGGAVAAAIAAAAAAAAAATTPTSTGPAATGSGNANGSGNGNGNGN 228
             ::.||:|..::    ..||||     :|||||||||    ||...||.....::.|...|.:||
  Fly   342 -SSGSPSGRDLSDYGFRIQLGG-----LAAAAAAAAA----TSRQIAAATYARSDTSEELNVDGN 396

  Fly   229 GNGNGNGNG--------------NGGGAATASAAAASKLSADCSGRTEVGHIKCEKNFELCEGCG 279
            ...:.:|:.              |...||..|:|:.| .|:|....|:......|...:..:..|
  Fly   397 DEDSNDGSHSTPSVCPVDLTRSVNSSAAANPSSASTS-ASSDRDAATKRLAFSVENILDPNKFTG 460

  Fly   280 QKI------HDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCC 338
            .|:      |.|        .|                 .|.|:.::..::|.|           
  Fly   461 NKLPSGPFGHPR--------QW-----------------SYERDEEMQERLDDD----------- 489

  Fly   339 HAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQH 403
                                             :.|....:|      .:|::::        ..
  Fly   490 ---------------------------------QSEDMSAQD------LNDMDQD--------DM 507

  Fly   404 CGFVGLDEEDLLRPRDGRRG------------------PKRPRTILTSQQRKQFKASFDQSP--K 448
            |. .|.|.:|.....|.::|                  |:|.||..|.:|....:..|..:.  .
  Fly   508 CD-DGSDIDDPSSETDSKKGGSRNGDGKSGGGGGGGSKPRRARTAFTYEQLVSLENKFKTTRYLS 571

  Fly   449 PCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGG----------SGGGS-GSG 499
            .|.::.  ||....|:...|::||||:|.|.|      |||.|          .|||| |.|
  Fly   572 VCERLN--LALSLSLTETQVKIWFQNRRTKWK------KQNPGMDVNSPTIPPPGGGSFGPG 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 8/57 (14%)
LIM 333..388 CDD:295319 2/54 (4%)
Homeobox 427..480 CDD:278475 16/54 (30%)
slouNP_001262808.1 Homeobox 549..601 CDD:278475 16/53 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 45 1.000 Domainoid score I3555
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.000

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