Protein Alignment Lmx1a and abd-A

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Alignment Length: 593
• Identity: 131/593 - (22%)
• Similarity: 192/593 - (32%)
• Gaps: 262/593 - (44%)

  Fly    33 NPNPGSMTASSGNSLH--LSNSNNNLPTSISGN---------------NSPTATASLTGQHQQHQ 80
            |...||.|:::.||..  .|:||||...::||.               :||.:::|...||....
  Fly    64 NTIAGSNTSNTNNSSSSPSSSSNNNSNLNLSGGSLSPSHLSQHLGQSPHSPVSSSSPFQQHHPQV 128

  Fly    81 QQQH--QQQQQHPHQQHQQH--------------QQQHAAS-------------------TTPVP 110
            ||||  .|||||.|.|.|||              ||||..|                   |.|..
  Fly   129 QQQHLNHQQQQHLHHQQQQHHHQYSSLSAALQLQQQQHHISKLAAAAVASHGHAHQQLLLTPPSA 193

  Fly   111 INSCPTPTGHSPLSSSSSNSNHNNNNNNNNGGSSSNNLHSACNTLTAAAVAAASAAAVAAPSPAG 175
            .||....:..||..|:|.:|:.:.:.|:|:.||                 |:|||:|.||.|.|
  Fly   194 GNSQAGDSSCSPSPSASGSSSLHRSLNDNSPGS-----------------ASASASASAASSVA- 240

  Fly   176 TSVATSQLGGAVAAAIAAAAAAAAAATTPTS-TGPAATGSGNANGSGNGNGNGNG---------- 229
                        |||.||||||:::...||| ..|..:...:::|..:|.....|
  Fly   241 ------------AAAAAAAAAASSSFAIPTSKMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYT 293

  Fly   230 ----NGNGNGNGNGGGA---------ATASAAAASKLSADCSGRTEVGHIKCEKNFELCEGCGQK 281
                |...:.:.....:         |||:|:|.|..||...|...:|:...:....:..|.|
  Fly   294 DTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQPASGVMPGAG-- 356

  Fly   282 IHDRFLMNVGDA--------------NWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGV 332
                   ..|.|              :|.........||                  |::.
  Fly   357 -------GAGGAGIADLPRYPWMTLTDWMGSPFERVVCG------------------DFNG---- 392

  Fly   333 KCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLA 397
                               ||           .|  |.::|.|...|...|     :||||...
  Fly   393 -------------------PN-----------GC--PRRRGRQTYTRFQTL-----ELEKEFHF- 419

  Fly   398 AAAAQHCGFVGLDEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTG 462
                .|                          .||.::|.:              :..||.
  Fly   420 ----NH--------------------------YLTRRRRIE--------------IAHALC---- 436

  Fly   463 LSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGSGSGRGTGNSSATDDKDTNDK----------- 516
            |:.|.:::||||:|.|:||..|..|:.              |..|..|::..:|
  Fly   437 LTERQIKIWFQNRRMKLKKELRAVKEI--------------NEQARRDREEQEKMKAQETMKSAQ 487

  Fly   517 EDKCVKQE 524
            ::|.|:|:
  Fly   488 QNKQVQQQ 495

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	8/65 (12%)
		LIM	333..388	CDD:295319	8/54 (15%)
		Homeobox	427..480	CDD:278475	13/52 (25%)
abd-A	NP_732176.1	Homeobox	402..454	CDD:278475	21/105 (20%)
		Abdominal-A	456..478	CDD:289192	6/35 (17%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	45	1.000	Domainoid score	I3555
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	1.000