Protein Alignment Lmx1a and Ubx

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_536752.1
• Gene: Ubx / 42034
• FlyBaseID: FBgn0003944
• Length: 389
• Species: Drosophila melanogaster
• Alignment Length: 444
• Identity: 87/444 - (19%)
• Similarity: 130/444 - (29%)
• Gaps: 157/444 - (35%)

  Fly    90 HPHQ----------QHQQHQQQHAASTTPVPINSCPTPTGHSPLSSSSSNSNHNNNNNNNNGGSS 144
            ||||          .|.|.....||:....|::...:|..:..|..::.:|.::
  Fly    14 HPHQATGMAMGSGGHHDQTASAAAAAYRGFPLSLGMSPYANHHLQRTTQDSPYD----------- 67

  Fly   145 SNNLHSACNTLTAAAVAA-------ASAAAVAAPSPAGTSVATSQLGGAVAAAIAAAAAAAAAAT 202
             .::.:|||.:......|       ..|.||........:..::..||.
  Fly    68 -ASITAACNKIYGDGAGAYKQDCLNIKADAVNGYKDIWNTGGSNGGGGG---------------- 115

  Fly   203 TPTSTGPAATGSGNANGSGNGNGNGNGNGNGNGNGNGGGAATASAAAA-SKLSA--DCSGRTEVG 264
               ..|....|:|...|:||.||....|.||..|..||.....||... |::..  |.||.:.|.
  Fly   116 ---GGGGGGGGAGGTGGAGNANGGNAANANGQNNPAGGMPVRPSACTPDSRVGGYLDTSGGSPVS 177

  Fly   265 HI--KCEKNFELCEGCGQKIHDRFLMNVGDAN--WHEQC-----LACCYCGMQLH----HTCY-- 314
            |.  ....|..:..|.|.....:..:.|..|.  |:..|     .|.......||    ||.|
  Fly   178 HRGGSAGGNVSVSGGNGNAGGVQSGVGVAGAGTAWNANCTISGAAAQTAAASSLHQASNHTFYPW 242

  Fly   315 ----------VRNSKLYCKMDYDRLFGVK-------CSSCCHAILPQELVMRPIPNFVFHLPCFV 362
                      ...||:  :.|..:..|:.       ..|...::||..|
  Fly   243 MAIAGECPEDPTKSKI--RSDLTQYGGISTDMGKRYSESLAGSLLPDWL---------------- 289

  Fly   363 CYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGLDEEDLLRPRDGRRGPKRP 427
                                                      |..||          .|||
  Fly   290 ------------------------------------------GTNGL----------RRRG---- 298

  Fly   428 RTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKK 481
            |...|..|..:.:..|..:....|:.|..:|....|:.|.:::||||:|.|:||
  Fly   299 RQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 352

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	15/74 (20%)
		LIM	333..388	CDD:295319	4/61 (7%)
		Homeobox	427..480	CDD:278475	15/52 (29%)
Ubx	NP_536752.1	Homeobox	299..352	CDD:395001	15/52 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	45	1.000	Domainoid score	I3555
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	1.000