Protein Alignment Lmx1a and Antp

DIOPT Version :9

• Sequence 1: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Sequence 2: NP_996167.1
• Gene: Antp / 40835
• FlyBaseID: FBgn0260642
• Length: 378
• Species: Drosophila melanogaster
• Alignment Length: 508
• Identity: 94/508 - (18%)
• Similarity: 126/508 - (24%)
• Gaps: 218/508 - (42%)

  Fly    19 YSLQQNHGG----ARFLDNPNPGSMTASSGNSL-----HLSNSNNNLPTSISGNNSPTA-TASLT 73
            ||...||.|    .||   |....|...:|..:     |...|..:.|:|..|...|.| |....
  Fly    45 YSQNANHQGNMPYPRF---PPYDRMPYYNGQGMDQQQQHQVYSRPDSPSSQVGGVMPQAQTNGQL 106

  Fly    74 GQHQQHQQQQHQ----QQQQHPHQQHQQHQQQHAASTTPVPINSCPTPTGHSPLSSSSSNSNHNN 134
            |..||.||||.|    ||||...|..||.|||....|..|
  Fly   107 GVPQQQQQQQQQPSQNQQQQQAQQAPQQLQQQLPQVTQQV------------------------- 146

  Fly   135 NNNNNNGGSSSNNLHSACNTLTAAAVAAASAAAVAAPSPAGTSVATSQLGGAVAAAIAAAAAAAA 199
                                                     |.....|....|.|:....||...
  Fly   147 -----------------------------------------THPQQQQQQPVVYASCKLQAAVGG 170

  Fly   200 AATTPTSTGPAATGSGNANGSGNGNGNGNGNGNGNGNGNGGGAATASAAAASKLSADCSGRTEVG 264
            ....|                                 .||........:...::|..:....:|
  Fly   171 LGMVP---------------------------------EGGSPPLVDQMSGHHMNAQMTLPHHMG 202

  Fly   265 HIKCEKNFELCEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRL 329
            |.:.:..:.          |..:.:|.:.:             |.||...:          |.:.
  Fly   203 HPQAQLGYT----------DVGVPDVTEVH-------------QNHHNMGM----------YQQQ 234

  Fly   330 FGVKCSSCCHAILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEM 394
            .||.                                   |:....|.|:..||
  Fly   235 SGVP-----------------------------------PVGAPPQGMMHQGQ------------ 252

  Fly   395 FLAAAAAQHCGFVGLDEEDLLRPR---DGRRGP---------------KRPRTILTSQQRKQFKA 441
               .....|.|..|........|.   .|...|               ||.|...|..|..:.:.
  Fly   253 ---GPPQMHQGHPGQHTPPSQNPNSQSSGMPSPLYPWMRSQFGKCQERKRGRQTYTRYQTLELEK 314

  Fly   442 SFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGG 494
            .|..:....|:.|..:|....|:.|.:::||||:|.|.|| :.|.|...||||
  Fly   315 EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK-ENKTKGEPGSGG 366

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	5/51 (10%)
		LIM	333..388	CDD:295319	5/54 (9%)
		Homeobox	427..480	CDD:278475	15/52 (29%)
Antp	NP_996167.1	KLF1_2_4_N	<161..306	CDD:425360	30/260 (12%)
		Homeobox	301..354	CDD:395001	15/52 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	45	1.000	Domainoid score	I3555
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R3844
SonicParanoid	0	0.000	Not matched by this tool.
	2	2.030